View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12113_low_6 (Length: 447)
Name: NF12113_low_6
Description: NF12113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12113_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 14131143 - 14131570
Alignment:
| Q |
18 |
tcaacaagagtgaaaggaaaagactatgtagaattcttgactgcaaaaagctctcaatggaagcgtgcatgcatgcagcacaaaatgagctactcccatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14131143 |
tcaacaagagtgaaaggaaaagactatgtagaattcttgactgcaaaaagctctcaatggaagcgtgcatgcatgcagcacaaaatgagctactcccatt |
14131242 |
T |
|
| Q |
118 |
aagagttgtcgttcaagttctgttctttgagcaagctagagcagcatcatctggtggcaaagtaacagaattacaaagcaatatcaaagcattgcttaca |
217 |
Q |
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| T |
14131243 |
aagagttgttgttcaagttctgttctttgagcaagctagagcagcatcatctggtggcaaagtaacagaattacaaagcaatatcaaagcattgcttaca |
14131342 |
T |
|
| Q |
218 |
acacatgggattgatccatcaaaacatacaacaacacagttaagctctactacaagtattcaaggtgaggataattggagtgtttctggtttcaagtcac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14131343 |
acacatgggattgatccatcaaaacatacaacaacacagttaagctctactacaagtattcaaggtgaggataattggagtgtttctggtttcaagtcac |
14131442 |
T |
|
| Q |
318 |
caaaatcaaagtcttcaactctaagaatgaagctagctgaggagcatgatgaatttgatgaaaatggtttggtaaatgatgatggaattggaagaaactc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14131443 |
caaaatcaaagtcttcaactctaagaatgaagctagctgaggagcatgatgaatttgatgaaaatggtttggtaaatgatgatggaattggaagaaactc |
14131542 |
T |
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| Q |
418 |
taaatttaagtccatctgtgctcctcct |
445 |
Q |
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| T |
14131543 |
taaatttaagtccatttgtgctcttcct |
14131570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 244
Target Start/End: Original strand, 29017285 - 29017500
Alignment:
| Q |
29 |
gaaaggaaaagactatgtagaattcttgactgcaaaaagctctcaatggaagcgtgcatgcatgcagcacaaaatgagctactcccattaagagttgtcg |
128 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||| || | | || |||||||| ||||| || |||||||| ||| ||||| |||| | |
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| T |
29017285 |
gaaaggaaaagactatgtagaattctagactgcaaaaaactctccatttcatcatgtatgcatgctgcacagaacgagctacttccactaagacttgttg |
29017384 |
T |
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| Q |
129 |
ttcaagttctgttctttgagcaagctagagcagcatcatctggtggcaaagtaacagaattacaaagcaatatcaaagcattgcttacaacacatgggat |
228 |
Q |
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| |||||||| |||||||||||||||||||| |||||||||||||||||||| || | || |||||| ||||||||||| || || | |||| || |
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| T |
29017385 |
tccaagttctcttctttgagcaagctagagctgcatcatctggtggcaaagtcaccaacatatcaagcaacatcaaagcattactcacttcttatggaat |
29017484 |
T |
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| Q |
229 |
tgatccatcaaaacat |
244 |
Q |
| |
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|||||||||||||||| |
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| T |
29017485 |
tgatccatcaaaacat |
29017500 |
T |
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