View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12113_low_8 (Length: 397)

Name: NF12113_low_8
Description: NF12113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12113_low_8
NF12113_low_8
[»] chr6 (9 HSPs)
chr6 (9-380)||(4046740-4047111)
chr6 (153-258)||(14936467-14936572)
chr6 (136-258)||(6330113-6330235)
chr6 (153-258)||(5685354-5685459)
chr6 (153-238)||(6068970-6069055)
chr6 (138-258)||(2830335-2830455)
chr6 (138-258)||(8382979-8383099)
chr6 (138-258)||(11572155-11572275)
chr6 (138-258)||(26602323-26602443)
[»] chr2 (15 HSPs)
chr2 (153-258)||(23227282-23227387)
chr2 (171-258)||(13724112-13724199)
chr2 (174-250)||(40713978-40714054)
chr2 (137-258)||(37666620-37666741)
chr2 (138-258)||(3055558-3055678)
chr2 (138-258)||(13197720-13197840)
chr2 (138-182)||(15258791-15258835)
chr2 (138-258)||(15372226-15372346)
chr2 (138-258)||(15896842-15896962)
chr2 (138-258)||(16044327-16044447)
chr2 (170-234)||(31469095-31469159)
chr2 (138-258)||(37990023-37990143)
chr2 (138-258)||(41478649-41478769)
chr2 (138-258)||(44397547-44397667)
chr2 (138-258)||(44398686-44398806)
[»] chr4 (12 HSPs)
chr4 (149-243)||(31013032-31013126)
chr4 (138-256)||(1716301-1716417)
chr4 (135-234)||(44900077-44900176)
chr4 (138-258)||(3904693-3904813)
chr4 (138-258)||(47838627-47838747)
chr4 (138-258)||(48336263-48336383)
chr4 (138-258)||(3372121-3372241)
chr4 (136-184)||(4780379-4780427)
chr4 (138-258)||(5986876-5986996)
chr4 (214-258)||(42797808-42797852)
chr4 (138-258)||(43900549-43900669)
chr4 (138-258)||(47833611-47833731)
[»] chr7 (7 HSPs)
chr7 (138-258)||(28469481-28469601)
chr7 (138-258)||(7482225-7482345)
chr7 (138-258)||(1738457-1738577)
chr7 (138-258)||(7240749-7240869)
chr7 (138-258)||(38063923-38064043)
chr7 (138-258)||(38441460-38441580)
chr7 (138-258)||(46840860-46840980)
[»] chr3 (18 HSPs)
chr3 (152-254)||(53275309-53275411)
chr3 (138-238)||(9213516-9213616)
chr3 (135-258)||(37508918-37509041)
chr3 (138-258)||(17653712-17653832)
chr3 (138-258)||(46208030-46208150)
chr3 (170-253)||(50989505-50989589)
chr3 (170-253)||(51092637-51092721)
chr3 (153-258)||(9111504-9111609)
chr3 (138-258)||(4238594-4238714)
chr3 (138-182)||(5237540-5237584)
chr3 (138-258)||(10297979-10298099)
chr3 (138-258)||(19557062-19557182)
chr3 (214-258)||(21295336-21295380)
chr3 (138-258)||(22721931-22722051)
chr3 (138-258)||(34080040-34080160)
chr3 (130-254)||(44785410-44785534)
chr3 (138-258)||(49823391-49823511)
chr3 (138-258)||(51406673-51406793)
[»] scaffold0171 (1 HSPs)
scaffold0171 (134-251)||(12370-12487)
[»] chr5 (5 HSPs)
chr5 (134-227)||(27080981-27081074)
chr5 (138-258)||(36563548-36563668)
chr5 (138-257)||(11795168-11795287)
chr5 (138-258)||(9395350-9395470)
chr5 (136-236)||(11574112-11574212)
[»] scaffold0204 (1 HSPs)
scaffold0204 (138-258)||(23785-23905)
[»] scaffold0009 (1 HSPs)
scaffold0009 (138-258)||(49505-49625)
[»] chr8 (12 HSPs)
chr8 (138-258)||(3304288-3304408)
chr8 (138-258)||(12763664-12763784)
chr8 (139-258)||(30171483-30171602)
chr8 (137-258)||(31654612-31654733)
chr8 (138-258)||(54622-54742)
chr8 (138-258)||(2890172-2890292)
chr8 (138-258)||(6552655-6552775)
chr8 (138-258)||(7785788-7785908)
chr8 (138-258)||(12343150-12343270)
chr8 (138-258)||(25601010-25601130)
chr8 (138-258)||(32114485-32114605)
chr8 (138-258)||(43199364-43199484)
[»] scaffold0650 (1 HSPs)
scaffold0650 (170-233)||(20-83)
[»] scaffold0464 (1 HSPs)
scaffold0464 (136-258)||(6141-6263)
[»] chr1 (7 HSPs)
chr1 (136-258)||(39401976-39402098)
chr1 (138-258)||(9981647-9981767)
chr1 (138-258)||(11897054-11897174)
chr1 (138-258)||(27159368-27159488)
chr1 (138-258)||(31842805-31842925)
chr1 (138-258)||(44668103-44668223)
chr1 (214-258)||(44955216-44955260)
[»] scaffold0017 (1 HSPs)
scaffold0017 (145-238)||(30037-30130)


Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 380
Target Start/End: Complemental strand, 4047111 - 4046740
Alignment:
Q  9 agcagagaatgtattgactggtgaaaaagttgccatatatgtcattgattgccgttggaaagagaatacacaaatggaagaaaaaggtaccatgttattt 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4047111 agcagagaatgtattgactggtgaaaaagttgccatatatctcattgattgccgttggaaagagaatacacaaatggaagaaaaaggtaccatgttattt 4047012  T
Q  109 gtatgtcaacaattttcgagtatggtaactactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattctta 208  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| |||    
T  4047011 gtatgtcaacaattttcgagtatggtaactactccctctgatcttatttataaaagacgttttggtctacaaaaatcgatatatttaatccaaattttta 4046912  T
Q  209 gccaaatacatcatcttttgttgacctaaaagttccttataaataggacctgcgaatattattgtnnnnnnnttatgcatatgtccaaacatatttcata 308  Q
       ||||| ||  |||||||||||| ||||| |||||||||||||||| |||||| |||||||||       |||||||||||| |||||||||||||||    
T  4046911 tttaaatatattttcttttgttgacttaaaaattccttataaataggatctgcgagtattattgtaaaaaaattatgcatatgtacaaacatatttcata 4046812  T
Q  309 atcttagtgtcaattggttttgagaagtaacattgtgatgtaccaatataatgaaatgtgattatactattt 380  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4046811 atcttagtgtcaattagttttgagaagtaacattgtgatgtaccaatataatgaaatgtgattatactattt 4046740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 258
Target Start/End: Complemental strand, 14936572 - 14936467
Alignment:
Q  153 tatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaaagttccttataaat 252  Q
    ||||||||| |||  ||| ||||||||| ||| ||| ||||||   |||||||||| | | |||||||| |||||||||||||||| ||| ||| || ||    
T  14936572 tatttataagagatatttgggtcaacaatagttgatgtatttggaacaaattcttaactagatacatcaccttttgttgacctaaatgtttcttctatat 14936473  T
Q  253 aggacc 258  Q
    ||||||    
T  14936472 aggacc 14936467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 258
Target Start/End: Original strand, 6330113 - 6330235
Alignment:
Q  136 actactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacct 235  Q
    |||||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| ||||||||||||     
T  6330113 actactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgaccc 6330212  T
Q  236 aaaagttccttataaataggacc 258  Q
    |||| |  |||||||||||||||    
T  6330213 aaaattctcttataaataggacc 6330235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 258
Target Start/End: Original strand, 5685354 - 5685459
Alignment:
Q  153 tatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaaagttccttataaat 252  Q
    |||| |||||| || ||| ||||||||||||| ||| ||||||  ||||||| ||| | |  |||||||| ||||| ||||| ||| ||| |||||||||    
T  5685354 tattaataaaaaacatttgggtcaacaaaagttgatgtatttggaccaaattattaacaagttacatcatattttgctgacccaaatgtttcttataaat 5685453  T
Q  253 aggacc 258  Q
    | ||||    
T  5685454 aagacc 5685459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 6069055 - 6068970
Alignment:
Q  153 tatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaa 238  Q
    |||||||||||||  ||| |||||||||||||  || |||||| || ||||| ||| |   |||| ||||||||||||||||||||    
T  6069055 tatttataaaagatatttaggtcaacaaaagttaatgtatttggtctaaatttttaactcgatacttcatcttttgttgacctaaa 6068970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 2830335 - 2830455
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  2830335 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 2830434  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  2830435 aattctcttataaataggacc 2830455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 8383099 - 8382979
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  8383099 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 8383000  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  8382999 aattctcttataaataggacc 8382979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 11572275 - 11572155
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  11572275 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 11572176  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  11572175 aattctcttataaataggacc 11572155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 26602323 - 26602443
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  26602323 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 26602422  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  26602423 aattctcttataaataggacc 26602443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 153 - 258
Target Start/End: Complemental strand, 23227387 - 23227282
Alignment:
Q  153 tatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaaagttccttataaat 252  Q
    ||||||||| |||| ||||||||||||||||| ||| |||||| ||||||||||||| || ||||||||  |||||||||||||||  || |||||||||    
T  23227387 tatttataagagacattttggtcaacaaaagttgatgtatttggtccaaattcttagtcagatacatcacattttgttgacctaaatatttcttataaat 23227288  T
Q  253 aggacc 258  Q
    | ||||    
T  23227287 atgacc 23227282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 13724199 - 13724112
Alignment:
Q  171 tggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaaagttccttataaataggacc 258  Q
    |||||||||||||| ||| ||| || ||||| || ||| |||||||||||| |||||||||||||| | ||  ||| |||||||||||    
T  13724199 tggtcaacaaaagttgatgtatctggtccaattttttaaccaaatacatcaacttttgttgacctagatgtctcttgtaaataggacc 13724112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 40713978 - 40714054
Alignment:
Q  174 tcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaaagttccttataa 250  Q
    |||| |||||||||| |||||| |||| ||| | | |||||||||||| |||||||||||||| ||||  |||||||    
T  40713978 tcaataaaagtcgatgtatttggtccatattatgaaccaaatacatcaacttttgttgacctacaagtctcttataa 40714054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 37666741 - 37666620
Alignment:
Q  137 ctactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgaccta 236  Q
    ||||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||| |  |||| ||| | | |||||||| |||| ||||||| |    
T  37666741 ctactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttgaactgaatttttaactagatacatcaactttagttgaccca 37666642  T
Q  237 aaagttccttataaataggacc 258  Q
    ||| |  |||||||||||||||    
T  37666641 aaattctcttataaataggacc 37666620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 3055558 - 3055678
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  3055558 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 3055657  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  3055658 aattctcttataaataggacc 3055678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 13197840 - 13197720
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  13197840 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 13197741  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  13197740 aattctcttataaataggacc 13197720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 15258791 - 15258835
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaa 182  Q
    ||||| |||||||||||||||| ||||||||||  ||||||||||    
T  15258791 tactctctccgatcttatttattaaagacgtttgagtcaacaaaa 15258835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 15372226 - 15372346
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    ||||||||||  || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  15372226 tactccctccagtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaacgagatacatcaacttttgttgacccaa 15372325  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  15372326 aattctcttataaataggacc 15372346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 15896842 - 15896962
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  15896842 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 15896941  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  15896942 aattctcttataaataggacc 15896962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 16044447 - 16044327
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||| |  |||| ||| | | |||||||| |||| ||||||| ||    
T  16044447 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttgaactgaatttttaactagatacatcaactttagttgacccaa 16044348  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  16044347 aattctcttataaataggacc 16044327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 31469159 - 31469095
Alignment:
Q  170 ttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacc 234  Q
    ||||||||| |||||  || |||||||| |||||| ||| |||||||||| | ||||||||||||    
T  31469159 ttggtcaacgaaagttaatgtatttgatacaaatttttaaccaaatacattaacttttgttgacc 31469095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 37990143 - 37990023
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  37990143 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 37990044  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  37990043 aattctcttataaataggacc 37990023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 41478769 - 41478649
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  41478769 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 41478670  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  41478669 aattctcttataaataggacc 41478649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 44397547 - 44397667
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  44397547 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 44397646  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  44397647 aattctcttataaataggacc 44397667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 44398686 - 44398806
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  44398686 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 44398785  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  44398786 aattctcttataaataggacc 44398806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 31013032 - 31013126
Alignment:
Q  149 atcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaaagttc 243  Q
    |||||||||||||||||| ||| | ||||||||||| ||| |||||| |  ||||||||| | | ||||||||||||||||||||||||| ||||    
T  31013032 atcttatttataaaagacatttagatcaacaaaagtagatgtatttggtttaaattcttaactagatacatcatcttttgttgacctaaatgttc 31013126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 256
Target Start/End: Original strand, 1716301 - 1716417
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    ||||||||||| |||||||||||| |||   |||||||||||||||| ||| ||| ||||||||  | ||| ||| || ||||| |||| ||||||||||    
T  1716301 tactccctccggtcttatttataagagataatttggtcaacaaaagttgatgtatctgatccaa--ttttaaccagatgcatcaactttggttgacctaa 1716398  T
Q  238 aagttccttataaatagga 256  Q
    |  |  |||||||||||||    
T  1716399 acttctcttataaatagga 1716417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 234
Target Start/End: Original strand, 44900077 - 44900176
Alignment:
Q  135 aactactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacc 234  Q
    |||||||||||||| || ||||||||| |||  || |||||||||||||| ||||||| || ||||| |  ||| ||| |||| ||| ||||||||||||    
T  44900077 aactactccctccggtcctatttataagagatattctggtcaacaaaagttgatatatctggtccaattgtttaaccagatacgtcaacttttgttgacc 44900176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 3904813 - 3904693
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || |||||||||||||  ||| |||||||||||||  || ||||||  |  |||| ||| | ||||||||||  ||||||||||| ||    
T  3904813 tactacctccggtcctatttataaaagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactaaatacatcaatttttgttgacccaa 3904714  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  3904713 aattctcttataaataggacc 3904693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 47838747 - 47838627
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| ||||||||| ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  47838747 tactacctccgatcctatttataagagaaatttcggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgaccaaa 47838648  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  47838647 aattctcttataaataggacc 47838627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 48336263 - 48336383
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  48336263 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 48336362  T
Q  238 aagttccttataaataggacc 258  Q
    || || |||||||||||||||    
T  48336363 aattttcttataaataggacc 48336383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 3372121 - 3372241
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  3372121 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 3372220  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  3372221 aattatcttataaataggacc 3372241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 4780427 - 4780379
Alignment:
Q  136 actactccctccgatcttatttataaaagacgttttggtcaacaaaagt 184  Q
    ||||||||||||| || ||||||||| |||  |||||||||||||||||    
T  4780427 actactccctccggtcctatttataagagaaattttggtcaacaaaagt 4780379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 5986876 - 5986996
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| ||||||||  ||||||||| |||  | | |||||||||||||  || ||||||  |  |||| ||| | |||||||||| |||||||||||| ||    
T  5986876 tactacctccgattctatttataagagaaatataggtcaacaaaagtgaatgtatttggactgaatttttaactaaatacatcaacttttgttgacccaa 5986975  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  5986976 aattctcttataaataggacc 5986996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 42797808 - 42797852
Alignment:
Q  214 atacatcatcttttgttgacctaaaagttccttataaataggacc 258  Q
    |||||||| ||||||||||||||||| |  |||||||||||||||    
T  42797808 atacatcaacttttgttgacctaaaattctcttataaataggacc 42797852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 43900549 - 43900669
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    ||||||||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||| ||| ||    
T  43900549 tactccctccggtcctatttataagagaaatttaggtcaacaaaagtaaatgtatttggactgaatttttaactagatacatcaacttttgttaacccaa 43900648  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  43900649 aattctcttataaataggacc 43900669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 47833611 - 47833731
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  47833611 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 47833710  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  47833711 aattctcttataaataggacc 47833731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 28469481 - 28469601
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||||||| |||||||||||||||||||| ||| |||||||||||||  || |||  | |||||||| |||  || ||||||||  |||| |||||||||    
T  28469481 tactcccttcgatcttatttataaaagacatttaggtcaacaaaagttaatgtatcaggtccaaattattaatcagatacatcacattttattgacctaa 28469580  T
Q  238 aagttccttataaataggacc 258  Q
    | | | |||||||||| ||||    
T  28469581 atgattcttataaatatgacc 28469601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 7482225 - 7482345
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||| |  |||| ||| | | |||||||| |||||||||||| ||    
T  7482225 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttgaactgaatttttaactagatacatcaacttttgttgacccaa 7482324  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  7482325 aattctcttataaataggacc 7482345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 1738577 - 1738457
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  1738577 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 1738478  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  1738477 aattctcttataaataggacc 1738457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 7240749 - 7240869
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  7240749 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 7240848  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  7240849 aattctcttataaataggacc 7240869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 38064043 - 38063923
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  38064043 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 38063944  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  38063943 aattctcttataaataggacc 38063923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 38441460 - 38441580
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  |||  ||||||||||||  || ||||||| |  |||| ||| | | |||||||| |||||||||||| ||    
T  38441460 tactacctccggtcctatttataagagaaatttatgtcaacaaaagtgaatgtatttgaactgaatttttaactagatacatcaacttttgttgacccaa 38441559  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  38441560 aattctcttataaataggacc 38441580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 46840860 - 46840980
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  46840860 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 46840959  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  46840960 aattctcttataaataggacc 46840980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 53275309 - 53275411
Alignment:
Q  152 ttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaaagttccttataaa 251  Q
    ||||||||||||||  ||| ||||||||||| | ||| ||||| |||||||||||||   | ||||||||| |||||||||||| ||  || ||||||||    
T  53275309 ttatttataaaagatatttgggtcaacaaaaattgatgtatttaatccaaattcttaattagatacatcatattttgttgaccttaatatttcttataaa 53275408  T
Q  252 tag 254  Q
    |||    
T  53275409 tag 53275411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 9213516 - 9213616
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    ||||||||||| || |||||||||||||| |||| |||||||||||| ||| ||| ||  | || ||  || ||||||||||||  ||||||||||||||    
T  9213516 tactccctccggtcctatttataaaagacattttagtcaacaaaagttgatgtatctggactaattttataaccaaatacatcaatttttgttgacctaa 9213615  T
Q  238 a 238  Q
    |    
T  9213616 a 9213616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 258
Target Start/End: Original strand, 37508918 - 37509041
Alignment:
Q  135 aactactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacc 234  Q
    |||||||||||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| ||||||||||||    
T  37508918 aactactccctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacc 37509017  T
Q  235 taaaagttccttataaataggacc 258  Q
     |||| |  |||||||||||||||    
T  37509018 caaaattctcttataaataggacc 37509041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 17653712 - 17653832
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    ||||||||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  17653712 tactccctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 17653811  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  17653812 aattctcttataaataggacc 17653832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 46208030 - 46208150
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    ||||||||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| |||   | |||||||| |||||||||||||||    
T  46208030 tactccctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaaatagatacatcaacttttgttgacctaa 46208129  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  46208130 aattctcttataaataggacc 46208150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 50989505 - 50989589
Alignment:
Q  170 ttggtcaacaaaagtcgatatatttgatccaaattcttagccaaa-tacatcatcttttgttgacctaaaagttccttataaata 253  Q
    |||||||| ||||||  ||||||||  | |||||||||| ||||| ||||||||||||| ||||| ||||| || ||||||||||    
T  50989505 ttggtcaagaaaagttaatatatttagttcaaattcttaaccaaaatacatcatcttttattgacataaaaatttcttataaata 50989589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 51092637 - 51092721
Alignment:
Q  170 ttggtcaacaaaagtcgatatatttgatccaaattcttagccaaa-tacatcatcttttgttgacctaaaagttccttataaata 253  Q
    |||||||| ||||||  ||||||||  | |||||||||| ||||| ||||||||||||| ||||| ||||| || ||||||||||    
T  51092637 ttggtcaagaaaagttaatatatttagttcaaattcttaaccaaaatacatcatcttttattgacataaaaatttcttataaata 51092721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 258
Target Start/End: Complemental strand, 9111609 - 9111504
Alignment:
Q  153 tatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaaagttccttataaat 252  Q
    ||||||||| |||  ||| |||||||||||||  || ||||||| |  |||| ||| | | |||||||| |||||||||||| |||| |  |||||||||    
T  9111609 tatttataagagaaatttaggtcaacaaaagtgaatgtatttgaactgaatttttaactagatacatcaacttttgttgacccaaaattctcttataaat 9111510  T
Q  253 aggacc 258  Q
    ||||||    
T  9111509 aggacc 9111504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 4238594 - 4238714
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  4238594 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgaccaaa 4238693  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  4238694 aattctcttataaataggacc 4238714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 5237540 - 5237584
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaa 182  Q
    |||||| || ||||||||||||||||||||||||  |||||||||    
T  5237540 tactccttctgatcttatttataaaagacgtttttttcaacaaaa 5237584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 10297979 - 10298099
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  10297979 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 10298078  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  10298079 aattctcttataaataggacc 10298099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 19557182 - 19557062
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  19557182 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 19557083  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  19557082 aattctcttataaataggacc 19557062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 21295380 - 21295336
Alignment:
Q  214 atacatcatcttttgttgacctaaaagttccttataaataggacc 258  Q
    |||||||| ||||||||||||||||| |  |||||||||||||||    
T  21295380 atacatcaacttttgttgacctaaaattctcttataaataggacc 21295336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 22721931 - 22722051
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  22721931 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 22722030  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  22722031 aattctcttataaataggacc 22722051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 34080160 - 34080040
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  34080160 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaacaagatacatcaacttttgttgacccaa 34080061  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  34080060 aattctcttataaataggacc 34080040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 44785534 - 44785410
Alignment:
Q  130 atggtaactactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgt 229  Q
    ||||||| |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||    
T  44785534 atggtaaatactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgt 44785435  T
Q  230 tgacctaaaagttccttataaatag 254  Q
    ||||| |||| |  |||||||||||    
T  44785434 tgacccaaaattctcttataaatag 44785410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 49823511 - 49823391
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  49823511 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 49823412  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  49823411 aattctcttataaataggacc 49823391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 51406673 - 51406793
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| |||||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | ||||||||  ||||||||||| ||    
T  51406673 tactacctccggtcttatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaatttttgttgacccaa 51406772  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  51406773 aattctcttataaataggacc 51406793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 251
Target Start/End: Complemental strand, 12487 - 12370
Alignment:
Q  134 taactactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgac 233  Q
    |||||| |||||||| || ||||||||| |||  |||||||||| |||||| | | | |||| || ||||||||| ||| ||||||||  ||||||||||    
T  12487 taactattccctccggtcctatttataagagatattttggtcaaaaaaagttggtgtgtttggtctaaattcttaaccagatacatcacattttgttgac 12388  T
Q  234 ctaaaagttccttataaa 251  Q
    || || ||| ||||||||    
T  12387 ctgaatgtttcttataaa 12370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 27081074 - 27080981
Alignment:
Q  134 taactactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatctttt 227  Q
    |||||||||  ||||||| |||||| || |||| ||| ||||||||||||| ||| ||||| ||| ||||| |||  |||||| ||||||||||    
T  27081074 taactactctttccgatcctatttacaagagacatttaggtcaacaaaagttgatgtatttaatctaaatttttaatcaaataaatcatctttt 27080981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 36563668 - 36563548
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| ||||||||| ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  36563668 tactacctccgatcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 36563569  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  36563568 aattctcttataaataggacc 36563548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 11795168 - 11795287
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| ||||||||| ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  11795168 tactacctccgatcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 11795267  T
Q  238 aagttccttataaataggac 257  Q
    || |  ||||||||||||||    
T  11795268 aattctcttataaataggac 11795287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 9395350 - 9395470
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  9395350 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 9395449  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  9395450 aattctcttataaataggacc 9395470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 11574212 - 11574112
Alignment:
Q  136 actactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacct 235  Q
    ||||||| ||||| || ||||||||| |||| ||| ||||||||||| | || |||| || ||||| || ||| | | |||||| | |||||||||||||    
T  11574212 actactctctccggtcctatttataagagacatttaggtcaacaaaaattgaaatatctggtccaatttgttaactagatacattaacttttgttgacct 11574113  T
Q  236 a 236  Q
    |    
T  11574112 a 11574112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 23785 - 23905
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  23785 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 23884  T
Q  238 aagttccttataaataggacc 258  Q
    || || |||||||||||||||    
T  23885 aattttcttataaataggacc 23905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 49505 - 49625
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | |||||||||| |||||||||||| ||    
T  49505 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactaaatacatcaacttttgttgacccaa 49604  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  49605 aattctcttataaataggacc 49625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 3304408 - 3304288
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  3304408 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 3304309  T
Q  238 aagttccttataaataggacc 258  Q
    || || |||||||||||||||    
T  3304308 aattttcttataaataggacc 3304288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 12763784 - 12763664
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| |||||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  12763784 tactacctccggtcttatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 12763685  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  12763684 aattatcttataaataggacc 12763664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 30171483 - 30171602
Alignment:
Q  139 actccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaa 238  Q
    ||||||||||||| |||||| || |||  |||  ||||||||||||  || || ||| ||||||||||||  || |||||||   |||||||||| ||||    
T  30171483 actccctccgatcctatttacaagagaattttgagtcaacaaaagttaatgtacttggtccaaattcttaatcagatacatcgcattttgttgacttaaa 30171582  T
Q  239 agttccttataaataggacc 258  Q
     ||| ||||||||| |||||    
T  30171583 tgtttcttataaatgggacc 30171602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 31654612 - 31654733
Alignment:
Q  137 ctactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgaccta 236  Q
    |||||||||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| |    
T  31654612 ctactccctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgaccca 31654711  T
Q  237 aaagttccttataaataggacc 258  Q
    ||| |   ||||||||||||||    
T  31654712 aaattcttttataaataggacc 31654733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 54742 - 54622
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  54742 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 54643  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  54642 aattctcttataaataggacc 54622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 2890292 - 2890172
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  2890292 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 2890193  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  2890192 aattctcttataaataggacc 2890172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 6552655 - 6552775
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  6552655 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 6552754  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  6552755 aattctcttataaataggacc 6552775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 7785908 - 7785788
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  7785908 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 7785809  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  7785808 aattctcttataaataggacc 7785788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 12343270 - 12343150
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  12343270 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgaccaaa 12343171  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  12343170 aattctcttataaataggacc 12343150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 25601130 - 25601010
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| ||||||||| ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||| | |||||||||||| ||    
T  25601130 tactacctccgatcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacattaacttttgttgacccaa 25601031  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  25601030 aattctcttataaataggacc 25601010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 32114605 - 32114485
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | ||||||||  ||||||||||| ||    
T  32114605 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaatttttgttgacccaa 32114506  T
Q  238 aagttccttataaataggacc 258  Q
    || || |||||||||||||||    
T  32114505 aattttcttataaataggacc 32114485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 43199484 - 43199364
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  43199484 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgaccaaa 43199385  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  43199384 aattctcttataaataggacc 43199364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 83 - 20
Alignment:
Q  170 ttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgac 233  Q
    ||||||||||||||| ||| ||||||  | ||||| ||| |||||||||||| |||||||||||    
T  83 ttggtcaacaaaagttgatgtatttggactaaatttttaaccaaatacatcaacttttgttgac 20  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 258
Target Start/End: Complemental strand, 6263 - 6141
Alignment:
Q  136 actactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacct 235  Q
    |||||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||| ||  |  |||| ||| | | |||||||| ||||||||||||     
T  6263 actactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatgtggactgaatttttaactagatacatcaacttttgttgaccc 6164  T
Q  236 aaaagttccttataaataggacc 258  Q
    |||| || |||||||||||||||    
T  6163 aaaattttcttataaataggacc 6141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 258
Target Start/End: Complemental strand, 39402098 - 39401976
Alignment:
Q  136 actactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacct 235  Q
    |||||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| ||||||||||||     
T  39402098 actactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgaccc 39401999  T
Q  236 aaaagttccttataaataggacc 258  Q
    |||| |  |||||||||||||||    
T  39401998 aaaattctcttataaataggacc 39401976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 9981647 - 9981767
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  9981647 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 9981746  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  9981747 aattctcttataaataggacc 9981767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 11897054 - 11897174
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    ||||||||||| || ||||||||| |||   || ||||||||||||| ||| ||| ||| |  |||| ||| ||  |||||||| |||||||||||| ||    
T  11897054 tactccctccggtcctatttataagagaaagttaggtcaacaaaagttgatgtatctgaactgaatttttaaccggatacatcaacttttgttgacccaa 11897153  T
Q  238 aagttccttataaataggacc 258  Q
    |  |  |||||||||||||||    
T  11897154 atttctcttataaataggacc 11897174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 27159488 - 27159368
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  27159488 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 27159389  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  27159388 aattctcttataaataggacc 27159368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 31842925 - 31842805
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  31842925 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 31842826  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  31842825 aattctcttataaataggacc 31842805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 44668223 - 44668103
Alignment:
Q  138 tactccctccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaa 237  Q
    |||| |||||| || ||||||||| |||  ||| |||||||||||||  || ||||||  |  |||| ||| | | |||||||| |||||||||||| ||    
T  44668223 tactacctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaa 44668124  T
Q  238 aagttccttataaataggacc 258  Q
    || |  |||||||||||||||    
T  44668123 aattctcttataaataggacc 44668103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 44955260 - 44955216
Alignment:
Q  214 atacatcatcttttgttgacctaaaagttccttataaataggacc 258  Q
    |||||||| ||||||||||||||||| |  |||||||||||||||    
T  44955260 atacatcaacttttgttgacctaaaattctcttataaataggacc 44955216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 30130 - 30037
Alignment:
Q  145 tccgatcttatttataaaagacgttttggtcaacaaaagtcgatatatttgatccaaattcttagccaaatacatcatcttttgttgacctaaa 238  Q
    ||||||| ||||||||| |||| |||   | ||||||||| ||| |||||| || ||||||||| | | |||||||||||||| ||||| ||||    
T  30130 tccgatcatatttataatagacatttaaataaacaaaagtagatgtatttggtctaaattcttaactagatacatcatcttttattgacataaa 30037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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