View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12113_low_9 (Length: 354)
Name: NF12113_low_9
Description: NF12113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12113_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 15 - 338
Target Start/End: Original strand, 18348014 - 18348337
Alignment:
| Q |
15 |
ctgtgtggctgtgagtgttgtagttgcagcagcttcaatgaagtgtcttcttccacataagcatggtttagtggttggttccaccaagttatcatcatca |
114 |
Q |
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| T |
18348014 |
ctgtgtggctgtgagtgttgtagttgcagcagcttcaatgaagtgtcttcttccacataagcatggtttagtggttggttccaccaagttatcatcatca |
18348113 |
T |
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| Q |
115 |
gggaggagagactccatggtgctgctgagtttgtctgagttaacacgtttgtgcatcataatatgagacttgtgattgtgattgtaattgtgggtgttgt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18348114 |
gggaggagagactccatggtgctgctgagtttgtctgagttaacacgtttgtgcatcataatatgagacttgtgattgtgattgtgattgtgggtgttgt |
18348213 |
T |
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| Q |
215 |
tgatagctttgtttttgggtgtgaaggaatgcaatgatacttttataccaagaatgggagagttaagaagattcattacgggtgttgacatgatgtgata |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18348214 |
tgatagctttgtttttgggtgtgaaggaatgcaatgatagttttataccaagaatgggagagttaagaagattcattacgggtgttgacatgatgtgata |
18348313 |
T |
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| Q |
315 |
ttgaaagttcaatgtgttgaaact |
338 |
Q |
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|||||||||||||||||||||||| |
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| T |
18348314 |
ttgaaagttcaatgtgttgaaact |
18348337 |
T |
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