View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12114_high_1 (Length: 767)
Name: NF12114_high_1
Description: NF12114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12114_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 145 - 759
Target Start/End: Complemental strand, 30707428 - 30706826
Alignment:
| Q |
145 |
ttaatcatttgattgtgtgagtagcagtaaattgggaaactccttctagatacgtatacataacagtaaattaatgcatctagacgtagttaagtcgtga |
244 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |||||| | ||||||||||||||| |
|
|
| T |
30707428 |
ttaatcatttgattgtgtgagtaacaataaattgggaaactccttctagatatgtatacataacagtaaattaat-catctaaatgtagttaagtcgtga |
30707330 |
T |
|
| Q |
245 |
ttccaacatacgtatgcataacagtaaattaatttaggaattaagtcatatccacatcgtagtctaagaaattatgatttacatgttattaaaacttcgt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |
|
|
| T |
30707329 |
ttccaacatacgtatgcataacagtaaattaatttaggaattaagtcatatccacatcgtagtctaagaaattatgatttacatgttattgaaattccgt |
30707230 |
T |
|
| Q |
345 |
ctctagaacttaaagagctcnnnnnnnatgatatttcagacatttggatattttagaatgttcgtttaatagctcaattcttattttcttgaactctgcc |
444 |
Q |
| |
|
| |||| |||||| |||| ||||||||| || ||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
30707229 |
ccagagaatttaaagggctctttttt-atgatattttaggcatttggatgttttagaatgttcgtttaatagctcagttcttattttcttggactctgcc |
30707131 |
T |
|
| Q |
445 |
ctcttcttacaacnnnnnnnnnnnnnccttaatcttatctcata---taaggtgtgtgtttggttgtgcgcgagaaatacttctctctctaacctcttct |
541 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| | | ||||||||||||||||| ||||||||||| |||||||||||| |||| |
|
|
| T |
30707130 |
ctcttcttacaaaagaaaat-------cttaatcttatcttatactattaagtgtgtgtttggttgtgtgcgagaaatacctctctctctaac---ttct |
30707041 |
T |
|
| Q |
542 |
tctctaccctctctctagnnnnnnnnnnncccttcgctaccctcaaaaccccaaaatccaaactcttctctttcaagatgtagccttttccggtggtggc |
641 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
30707040 |
tctctaccctctctctagaagacaaa---cccttcgctaccttcaaaaccccaaaatccaaactcttctctttcaagatgtagccttcgccggcggtggt |
30706944 |
T |
|
| Q |
642 |
gcgacgagaacattggttctccgcaccacctctctccagctcgctgtcgtattccacaaggggcttcggagcggtgggtttagggtggttcactggcgtt |
741 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30706943 |
gcgacgagaacattggttctccgcaccacctctctccagctcgccgtcgtattccacaaggggcttcggagcggtgggtttagggtggttcactggcgtt |
30706844 |
T |
|
| Q |
742 |
ttggttcagatctctctg |
759 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
30706843 |
ttggttcagatctctctg |
30706826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 30707707 - 30707575
Alignment:
| Q |
17 |
acttttaaatttggttctttatactataatttcgttctttgaagttctttagacgggaataactttgaagagattgtaacgttttttgtattgaattgaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||| ||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30707707 |
acttttaaatttggttctttatactataactttgttctttgaaattctttagacgagcacaactttgaagagattgtaacgttttttgtattgaattgaa |
30707608 |
T |
|
| Q |
117 |
tagtagctgccgcatgcctacgatcttgttaat |
149 |
Q |
| |
|
||||||||||||||||| || |||||||||||| |
|
|
| T |
30707607 |
tagtagctgccgcatgcatatgatcttgttaat |
30707575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 584 - 755
Target Start/End: Complemental strand, 5231504 - 5231332
Alignment:
| Q |
584 |
tcaaaaccccaaaatccaaactcttctctttcaagatgtagccttttccggtggtggcgcgacgagaacattggttctccgcaccacctctctccagctc |
683 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| | ||||||| || ||| ||||||||||||||||| |||||||| |||||||||||| ||| |||| |
|
|
| T |
5231504 |
tcaaaatcccaaaatccaaactcttctttttta-gatgtagactccgccgacggtggcgcgacgagaacgttggttcttcgcaccacctctttcctgctc |
5231406 |
T |
|
| Q |
684 |
gctgtcgtattccacaaggggc--ttcggagcggtgggtttagggtggttcactggcgttttggttcagatctc |
755 |
Q |
| |
|
|| |||| ||||||||||||| ||||||| ||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
5231405 |
gccgtcgagttccacaaggggcaattcggagtcgtgggtttaaggtggttcaccggcgttttggttcagatctc |
5231332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University