View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12114_high_3 (Length: 544)
Name: NF12114_high_3
Description: NF12114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12114_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 496; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 24 - 531
Target Start/End: Original strand, 331585 - 332092
Alignment:
| Q |
24 |
acttattagttatttatttcgtttctttcttggttcttgaaaatgtatatatgtgatcagagattaggcatggcccacattgaaaacaattgcttctctg |
123 |
Q |
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| T |
331585 |
acttattagttatttatttcgtttctttcttggttcttgaaaatgtatatatgtgatcagagattaggcatggcccacattgaaaacaattgcttctctg |
331684 |
T |
|
| Q |
124 |
atattgatgaatggttggaacatgccaataagttttgcaaatccttcatcaatcatcatcacactgaggaaaatcttgaagcaggttagttggtttgcat |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
331685 |
atattgatgaatggttggaacatgccaataagttttgcaaatccttcttcaatcatcatcacactgaggaaaatcttgaagcaggttagttggttttcat |
331784 |
T |
|
| Q |
224 |
tagtacgttatatatgattcatgtcaaataatcaatgatttctggttttgtatttgatcagaaacaaggcaaaatggaaatccacaagacttgatgagaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
331785 |
tagtacgttatatatgattcatgtcaaataatcaatgatttctggttttgtatttgatcagaaacaaggcaaaatggaaatccacaagacttgatgagaa |
331884 |
T |
|
| Q |
324 |
tgtcagcagtatgcaacaatgacctaacagctcaagagcatgaattttacaacatagtattaccctcagttagagaagaaagtccacttcctcgtactat |
423 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
331885 |
tgtcagcagtatgcaacaaggacctaacagctcaagagcatgaattttacaacatagtattaccctcagttagagaagaaagtccacttcctcgtactat |
331984 |
T |
|
| Q |
424 |
tacctcctgcataaacagacatggagggtgcagcagcaatcccaaacttgaagctgatcatgaagatgtacgtaacaaagccaagcatcttcaacttatg |
523 |
Q |
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| T |
331985 |
tacctcctgcataaacagacatggagggtgcagcagcaatcccaaacttgaagctgatcatgaagatgtacgtaacaaagccaagcatcttcaacttatg |
332084 |
T |
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| Q |
524 |
cacaggtt |
531 |
Q |
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|||||||| |
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| T |
332085 |
cacaggtt |
332092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 1107326 - 1107264
Alignment:
| Q |
117 |
ttctctgatattgatgaatggttggaacatgccaataagttttgcaaatccttcatcaatcat |
179 |
Q |
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| T |
1107326 |
ttctctgatattgttgaatggttggaacatgccaataagtattgcaaatccttcttcaatcat |
1107264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 74 - 220
Target Start/End: Original strand, 11250477 - 11250617
Alignment:
| Q |
74 |
atgtgatcagagattaggcatggcccacattgaaaacaattgcttctctgatattgatgaatggttggaacatgccaataagttttgcaaatccttcatc |
173 |
Q |
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|||||||||||||||||| ||| || || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11250477 |
atgtgatcagagattaggtatgacctacgttgaaaacaattgcttctttgatattgatgaatggttggaacatgccaataagttttgcaaatccttca-- |
11250574 |
T |
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| Q |
174 |
aatcatcatcacactgaggaaaatcttgaagcaggttagttggtttg |
220 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11250575 |
----atcatcacactgaggaaaatcttgaagccggttagttggtttg |
11250617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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