View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12114_high_4 (Length: 515)
Name: NF12114_high_4
Description: NF12114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12114_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 11181147 - 11181643
Alignment:
| Q |
1 |
atgccaaagttgattgcttttcacctgatactgaaaactcaacctctagtctgattcttgagttgaagactgaactatctgtttatctcaacatgtcact |
100 |
Q |
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| T |
11181147 |
atgccaaagttgattgcttttcacctgatactgaaaactcaacctctagtctgattcttgagttgaagactgaactatctgtttatctcaacatgtcact |
11181246 |
T |
|
| Q |
101 |
tgagactatcattgacaacaatgttttcagcaatgtagagaggattgtaaattctttagcaggggaaattacagatgctttcaaacagaacatcctcaaa |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11181247 |
tgagactatcattgacaacaatgttttcaacaatgtagagaggattgtaaattctttagcaggggaaattacagatgctttcaaacagaacatcctcaaa |
11181346 |
T |
|
| Q |
201 |
gactttgcaaatcggttgaaaattttcaaagaaagtgttcctaaagccatgagcacattggaatcaagttctggtttcatgtctacttatgagaacctta |
300 |
Q |
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| T |
11181347 |
gactttgcaaatcggttgaaaattttcaaagaaagtgttcctaaagccatgagcacattggaatcaagttctggtttcatgtctacttatgagaacctta |
11181446 |
T |
|
| Q |
301 |
atatggagctgaatgtaaagttgagcgaaggacaagaaaaaattgaaaacttggagactaaactttctgaaacattggcaaaagagtatactattgatat |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11181447 |
atatggagctgaatgtaaagttgagtgaaggacaagaaaaaattgaaaacttggagactaaactttctgaaacattggcaaaagagtatactattgatat |
11181546 |
T |
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| Q |
401 |
ggagattcaaagattaattgatgaaaaaagtgagattcttgctcagaagaactttcttgaatctcaacttgataagtacactcaagtggtatctaag |
497 |
Q |
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| T |
11181547 |
ggagattcaaagattaattgatgaaaaaagtgagattcttgctcagaagaactttcttgaatctcaacttgataagtacactcaagtggtatctaag |
11181643 |
T |
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