View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12114_high_5 (Length: 371)
Name: NF12114_high_5
Description: NF12114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12114_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 3 - 358
Target Start/End: Complemental strand, 32745613 - 32745250
Alignment:
| Q |
3 |
atcattgagtagtttccggtattccattatgatttatgatttagttgaattctagcaatgattgtaactcttgctttgcttataccagattctccaagtt |
102 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32745613 |
atcattgagtagtttacggtattccattatgatttatgatttagttgaattctagcaatgattgtaactcttgctttgcttataccagattctctaagtt |
32745514 |
T |
|
| Q |
103 |
tgaagtctcagtacttcagctaattataatcataatcatgattacatttagagtaaaaagacagtgtaaaaaatactacagtaaatgcatcaccattagt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32745513 |
tgaagtctcagtacttcagctaattataatcataatcatgattacatttagaacaaaaagacagtgtaaaaaatactacagtaaatgcatcaccattagt |
32745414 |
T |
|
| Q |
203 |
ctaaaatgcaccaaaattcagtgacttcaaatttagagattttcaaacgattccaattattctgaa--------agtggagtctactaaaactatatatt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32745413 |
ctaaaatgcaccaaaattcagtgacttcaaatttagagattttcaaaccattccaattattctgaaagtgaagcagtggagtctactaaaactatatatt |
32745314 |
T |
|
| Q |
295 |
cccaattgcagtttaggctcctcactagtgaaacaactctggtaattgcaggcttctatctgtg |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32745313 |
cccaattgcagtttaggctcctcactagtgaaacaactctggtaattgcatgcttctatctgtg |
32745250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 275
Target Start/End: Original strand, 32735566 - 32735672
Alignment:
| Q |
170 |
aaaaaatactacagtaaatgcatcaccattagtctaaaatgcaccaaaattcagtgacttcaaatttagagattttcaaac-gattccaattattctgaa |
268 |
Q |
| |
|
|||||| |||||| ||||||||| | ||||||| |||||||||||| ||||||||||| ||| ||||||||| |||||||| |||||| |||||||||| |
|
|
| T |
32735566 |
aaaaaaaactacaataaatgcattatcattagtttaaaatgcaccagaattcagtgacatcagatttagagaatttcaaactcattccagttattctgaa |
32735665 |
T |
|
| Q |
269 |
agtggag |
275 |
Q |
| |
|
||||||| |
|
|
| T |
32735666 |
agtggag |
32735672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University