View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12114_low_15 (Length: 243)
Name: NF12114_low_15
Description: NF12114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12114_low_15 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 62 - 243
Target Start/End: Original strand, 13353744 - 13353925
Alignment:
| Q |
62 |
atatcattaaaatgtggaaatttatttacataacgattaaatcaaatataaatgctttggttcagtgcctaagattgtaaaatgttagatcttaccaaag |
161 |
Q |
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| T |
13353744 |
atatcattaaaatgtggaaatttatttacataacgattaaatcaaatataaatgctttggttcagtgcctaagattgtaaaatgttagatcttaccaaag |
13353843 |
T |
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| Q |
162 |
tgaaaaattgcaaatccataacataaactaaattaacttttgttttccatttaaagtagttgatttgtggaaataagaaaac |
243 |
Q |
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| T |
13353844 |
tgaaaaattgcacatccataacataaactaaattaacttttgttttccatttaaagtagttgatttgtggaaataagaaaac |
13353925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 242
Target Start/End: Complemental strand, 13368588 - 13368480
Alignment:
| Q |
132 |
aagattgtaaaatgttagatcttaccaaagtgaaaaattgcaaatccataacataaactaaattaacttttgttttccattt-aaagtagttgatttgtg |
230 |
Q |
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| T |
13368588 |
aagattgtaaaatgtaagaccctaccgcattgataaattacacatccataacataaactaaattaacct---ttttccatttaaaaatagttgatttgtg |
13368492 |
T |
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| Q |
231 |
gaaataagaaaa |
242 |
Q |
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| T |
13368491 |
gaaataagaaaa |
13368480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 13353670 - 13353711
Alignment:
| Q |
21 |
tttaactcgtgaccacaatcttcaataaccaatgatgcttta |
62 |
Q |
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| T |
13353670 |
tttaactcgtgaccacaatcgtcaataaccaatgatacttta |
13353711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 13320627 - 13320693
Alignment:
| Q |
132 |
aagattgtaaaatgttagatcttaccaaagtgaaaaattgcaaatccataacataaactaaattaac |
198 |
Q |
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| T |
13320627 |
aagattgtaaaacataagatcctaccaaaatgaaaaattacacatgcataacacaaactaaattaac |
13320693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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