View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12114_low_3 (Length: 628)
Name: NF12114_low_3
Description: NF12114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12114_low_3 |
 | |
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| [»] scaffold0854 (1 HSPs) |
| | |
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| [»] scaffold0836 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 4 - 477
Target Start/End: Original strand, 25389121 - 25389586
Alignment:
| Q |
4 |
tggcggagccaagtagaagggtatgggggcaccagcctccacaaacttttgagatttatttttaatagtatatatgttgatacattgactagaccacatc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25389121 |
tggcggagccaagtagaagggtatgggggcaccagcctgcacaaacttttgagatttctttttaatagtatatatgttgatacattgactagaccacatc |
25389220 |
T |
|
| Q |
104 |
aaccaatagaaattcaacaaactaagaagataaagagtttatttcctataaaatgtccatatggatcttgtttcttcccatatgttccctgtttcatcat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25389221 |
aaccaatagaaattcaacaaactaagaagataaagagtttatttcctataaaatgtccatatggatcttgtttcttcccatatgttccctgtttcatcat |
25389320 |
T |
|
| Q |
204 |
tatccatttttatcgatgtaattnnnnnnnnnnnnnnnnnnngttaattcttttcaatgaagtagtagtatatgtgagtataatttgtttccttctaaat |
303 |
Q |
| |
|
|||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25389321 |
tatcaatttttatcgatgtaattaaaactaagaaa--------ttaattattttcaatgaagtagtagtatatgtgagtataatttgtttccttctaaat |
25389412 |
T |
|
| Q |
304 |
ttagctactgaccaataaagaagnnnnnnnnctttcaaaggcacaattaagtagttacgaattagaattaggtttattgcatatgatatgagttatatat |
403 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25389413 |
ttagctactgaccaataaagaagttttttttctttcaaaggcacaattaagtagttacgaattagaattaggtttattgcatatgatatgagttatatat |
25389512 |
T |
|
| Q |
404 |
atggtgcatgagtatgaattgtaacatagttttaattgtatttttatagtattttatttctagcaataaataat |
477 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25389513 |
atgatgcatgagtatgaattgtaacatagttttaattgtatttttatagtattttatttctagcaataaataat |
25389586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 5 - 473
Target Start/End: Original strand, 16975195 - 16975675
Alignment:
| Q |
5 |
ggcggagccaagtagaagggtatgggggcaccagcctccacaaacttttgaga---tttatttttaata---gtatatatgttgatacattgactagacc |
98 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| || |
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|
| T |
16975195 |
ggcggagccaagtagaagggtttgggggctggtgcctgcacaaacttttgagaatttttatttttaatactagtatatatgttgatacattgactaggcc |
16975294 |
T |
|
| Q |
99 |
acatcaaccaa----------tagaaattcaacaaactaagaagataaagagtttatttcctataaaatgtccatatggatcttgtttcttcccatatgt |
188 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
16975295 |
acatccaccaatcacacccaatagaaattcaacaaactaagaagataaagagtttatttcctataaaatgtcctcatggatgttgtttcttcccatatgt |
16975394 |
T |
|
| Q |
189 |
tccctgtttcatcattatccatttttatcgatgtaattnnnnnnnnnnnnnnnnnnngttaattcttttcaatgaagtagtagtatatgtgagtataatt |
288 |
Q |
| |
|
|||||||||| |||||||||| |||||||| |||| || |||||||||| ||||||| |||||||||||| ||||||||| |
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|
| T |
16975395 |
tccctgtttcctcattatccacttttatcggtgtagttaaaactaagaaattaaaaagttaattcttgtcaatga---agtagtatatgtaagtataatt |
16975491 |
T |
|
| Q |
289 |
tgtttccttctaaatttagctactga-----------ccaataaagaagnnnnnnnnctttcaaaggcacaattaagtagttacgaattagaattaggtt |
377 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| | |||| || || |||||||||||||| ||||| ||||||| | || |
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|
| T |
16975492 |
tgtttccttctaaatttagccactgaacatcttgttcacaattatgaagttttttttctctctaaggcacaattaagaagttaggaattag-----gttt |
16975586 |
T |
|
| Q |
378 |
tattgcatatgatatgagttatatatatggtgcatgagtatgaattgtaacatagttttaattgtatttttatagtattttatttctagcaataaa |
473 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| |
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|
| T |
16975587 |
tattgcatatgatatgagttataca----atgtatgagtatgaattgtaacatagttttaattgtaattttata-tattt--tttctagcaataaa |
16975675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 475 - 601
Target Start/End: Original strand, 25389622 - 25389749
Alignment:
| Q |
475 |
aatcaacaatttttaatcctcaaacattttatgaatgtgaaagtatataattaggtccatttat-nnnnnnnnnnnnnntagaatttgatttgatgctcc |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
25389622 |
aatcaacaatttttaatcctcaaacattttatgaatgtgaaagtatataattaggtccatttataaaaaataaaaaaaatgaaatttgatttgatgctcc |
25389721 |
T |
|
| Q |
574 |
cactattgaaaatttctgcctccgccac |
601 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
25389722 |
cactattgaaaatttctgcctccgccac |
25389749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 555 - 601
Target Start/End: Original strand, 16975800 - 16975846
Alignment:
| Q |
555 |
gaatttgatttgatgctcccactattgaaaatttctgcctccgccac |
601 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||| ||||||||| |
|
|
| T |
16975800 |
gaatttgatttgatgcccccactattgaaaattcctggctccgccac |
16975846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 4 - 477
Target Start/End: Original strand, 38437624 - 38438104
Alignment:
| Q |
4 |
tggcggagccaagtagaagggtatgggggcaccagcctccacaaacttttgagatttatttttaatagtatatatgttgatacattgactagaccacatc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38437624 |
tggcggagccaagtagaagggtatgggggcaccagcctgcacaaacttttgagatttctttttaatagtatatatgttgatacattgactagaccacatc |
38437723 |
T |
|
| Q |
104 |
aaccaatagaaattcaacaaactaagaagataaagagtttatttcctataaaatgtccatatggatcttgtttcttcccatatgttccctgtttcatcat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38437724 |
caccaatagaaattcaacaaactaagaagataaaaagtttatttcctataaaatgtccatatggatcttgtttcttcccatatgttccctgtttcatcat |
38437823 |
T |
|
| Q |
204 |
tatccatttttatcgatgtaattnnnnnnnnnnnnnnnnnnngttaattcttttcaatgaagtagtagtatatgtgagtataatttgtttccttctaaat |
303 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38437824 |
tatccatttttatcgatgtaattaaaactaagaaattaaaaagttaattcttttcaatgaagtagtggtatatgtgagtataatttgtttccttctaaat |
38437923 |
T |
|
| Q |
304 |
ttagctactgaccaataaagaagnnnnnnnnctttcaaaggcacaattaagtagttacgaattagaattaggtttattgcatatgatatgagttatat-- |
401 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38437924 |
ttagctactgaccaataaagaagttttttttctttcaaaggcacaattaagtagttacgaattagaattaggtttattgcatatgatatgagttatatat |
38438023 |
T |
|
| Q |
402 |
-----atatggtgcatgagtatgaattgtaacatagttttaattgtatttttatagtattttatttctagcaataaataat |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38438024 |
atgtaatatggtgcatgagtatgaattgtaacatagttttaattgtatttttatagtattttatttctagcaataaataat |
38438104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 475 - 601
Target Start/End: Original strand, 38438140 - 38438267
Alignment:
| Q |
475 |
aatcaacaatttttaatcctcaaacattttatgaatgtgaaagtatataattaggtccatttat-nnnnnnnnnnnnnntagaatttgatttgatgctcc |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
38438140 |
aatcaacaatttttaatcctcaaacattttatgaatgtgaaagtatataaataggtccatttataaaaaaataaaaaaatggaatttgatttgatgctcc |
38438239 |
T |
|
| Q |
574 |
cactattgaaaatttctgcctccgccac |
601 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
38438240 |
cactattgaaaatttctgcctccgccac |
38438267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 533
Target Start/End: Complemental strand, 12586957 - 12586912
Alignment:
| Q |
488 |
taatcctcaaacattttatgaatgtgaaagtatataattaggtcca |
533 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||| |||||| |
|
|
| T |
12586957 |
taatcctcaaacacttgatgaatgtgaaagtatacaattgggtcca |
12586912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 7 - 314
Target Start/End: Complemental strand, 693 - 372
Alignment:
| Q |
7 |
cggagccaagtagaagggtatgggggcaccagcctccacaaacttttgaga---tttatttttaata---gtatatatgttgatacattgactagaccac |
100 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||| |||| |
|
|
| T |
693 |
cggagccaagtagaagcgtatgggg-cacaagcctacacaaacttttgagaatttttatttttaatactagtatatatgttgatatattgattaggccac |
595 |
T |
|
| Q |
101 |
atcaaccaat--------agaaattcaacaaactaagaagataaagagtttat----ttcctataaaatgtccatatggatcttgtttcttcccatatgt |
188 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| || ||| |||||||||||||||||| |
|
|
| T |
594 |
atccaccaatcacccaatagaaattcaacaaactaagaagataaagagcttatatatttcctataaaatgtcctcatcgatgttgtttcttcccatatgt |
495 |
T |
|
| Q |
189 |
tccctgtttcatcattatccatttttatcgatgtaattnnnnnnnnnnnnnnnnnnngttaattcttttcaatgaagtagtagtatatgtgagtataatt |
288 |
Q |
| |
|
||| |||||||||||| |||| |||||||| ||||||| | |||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
494 |
tccatgtttcatcattctccacttttatcggtgtaattaaaactaagaaattaaaaagctaattcttgtcaatga---agtagtatatgtgagtataatt |
398 |
T |
|
| Q |
289 |
tgtttccttctaaatttagctactga |
314 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
397 |
tgtttccttctaaatttagccactga |
372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0836
Description:
Target: scaffold0836; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 475 - 538
Target Start/End: Complemental strand, 5180 - 5117
Alignment:
| Q |
475 |
aatcaacaatttttaatcctcaaacattttatgaatgtgaaagtatataattaggtccatttat |
538 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||||||||||||||| |||||| ||||||||| |
|
|
| T |
5180 |
aatcatcaatttttaatcctcaaacacttgatgaatgtgaaagtataaaattagatccatttat |
5117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 412 - 450
Target Start/End: Complemental strand, 5278 - 5240
Alignment:
| Q |
412 |
tgagtatgaattgtaacatagttttaattgtatttttat |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5278 |
tgagtatgaattgtaacatagttttaattgtatttttat |
5240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 533
Target Start/End: Complemental strand, 49602501 - 49602456
Alignment:
| Q |
488 |
taatcctcaaacattttatgaatgtgaaagtatataattaggtcca |
533 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||| |||||| |
|
|
| T |
49602501 |
taatcctcaaacacttgatgaatgtgaaagtatacaattgggtcca |
49602456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 532
Target Start/End: Complemental strand, 22329504 - 22329460
Alignment:
| Q |
488 |
taatcctcaaacattttatgaatgtgaaagtatataattaggtcc |
532 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||| ||||| |
|
|
| T |
22329504 |
taatcctcaaacacttgatgaatgtgaaagtatacaattgggtcc |
22329460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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