View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12114_low_4 (Length: 614)
Name: NF12114_low_4
Description: NF12114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12114_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 59 - 595
Target Start/End: Original strand, 46227657 - 46228192
Alignment:
| Q |
59 |
atttgaggcagtggggttagaaaactagtattaatttataagaataagaatatataattatttgatgatttgaatgttgatttatagcaagacatacaga |
158 |
Q |
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| T |
46227657 |
atttgaggcagtggggttagaaaactagtattaatttataagaataagaatatataattatttgatgatttgaatgttgatttatagcaagacatacaga |
46227756 |
T |
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| Q |
159 |
actggaaatgagggagggggaccattaattatcatcatcatcactcatatgcatgagaattatttagccaaaaaagtcttattagaatgcccgtgaccga |
258 |
Q |
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| T |
46227757 |
actggaaatgagggagggggaccattaattatcatcatcatcactcatatgcatgagaattatttagccaaaaaagtcttattagaatgcccgtgaccga |
46227856 |
T |
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| Q |
259 |
ccgtatctcgtgcaaaccctcatgtaaagacaaattatccaccgcaaatatctccataaaaaaccataattgatcacgagcgagaaaacttttcatttct |
358 |
Q |
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| T |
46227857 |
ccgtatctcgtgcaaaccctcatgtaaagacaaattatccaccgcaaatatctccataaaaaaccataattgatcacgagcgagaaaacttttcatttct |
46227956 |
T |
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| Q |
359 |
aactctaacaactacaattcttatccatccaatcactgcaattcccaatccaaaaaagttactcaaagctagcaaatgtccaaaaatttcaacaaaacag |
458 |
Q |
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| T |
46227957 |
aactctaacaactacaattcttatccatccaatcactgcaattcccaatccaaaaaagttactcaaagctagcaaatgtccaaaaatttcaacaaaacag |
46228056 |
T |
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| Q |
459 |
ccacattttgtaagcatcaagctgcagtgaagttcatttttcatcacaccaatgatttcaaactcccnnnnnnnnactaatttgtgtcctttatgatttg |
558 |
Q |
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| T |
46228057 |
ccacattctgtaaacatcaagctgcagtgaagttcatttttcatcacaccaatgatttcaaactccc-tttttttactaatttgtgtcctttatgatttg |
46228155 |
T |
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| Q |
559 |
tcttttaaacatgtatacattgcacactcttccatac |
595 |
Q |
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| T |
46228156 |
tcttttaaacatgtatacattgcacactcttccatac |
46228192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 46227622 - 46227658
Alignment:
| Q |
8 |
cagcacagactcacagtgtgtacgcaaaaagatcaat |
44 |
Q |
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| T |
46227622 |
cagcacagactcacagtgtgtacgcaaaaagatcaat |
46227658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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