View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12114_low_7 (Length: 454)

Name: NF12114_low_7
Description: NF12114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12114_low_7
NF12114_low_7
[»] scaffold0018 (3 HSPs)
scaffold0018 (74-444)||(75078-75449)
scaffold0018 (1-62)||(75473-75534)
scaffold0018 (19-59)||(75515-75555)
[»] chr1 (1 HSPs)
chr1 (61-444)||(32620165-32620539)
[»] chr5 (5 HSPs)
chr5 (164-444)||(21974025-21974311)
chr5 (61-131)||(21974309-21974377)
chr5 (1-57)||(21974453-21974509)
chr5 (4-62)||(21974409-21974467)
chr5 (19-64)||(21974485-21974530)
[»] chr3 (5 HSPs)
chr3 (164-444)||(44479867-44480153)
chr3 (61-131)||(44479801-44479869)
chr3 (1-57)||(44479669-44479725)
chr3 (4-62)||(44479711-44479769)
chr3 (19-64)||(44479648-44479693)


Alignment Details
Target: scaffold0018 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 74 - 444
Target Start/End: Complemental strand, 75449 - 75078
Alignment:
Q  74 tcaaaggaaggtaaattgtttattagatgctctactaatttgttcattatatgcta-ctaaattgctt-atta-tatatgctgatgtatattaactttga 170  Q
    ||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||| ||||||||||| |  | ||||||||||||||| || |||||||    
T  75449 tcaaaggaaggtaaattgtttattatatgct--actaatttgtttattatatgctaactaaattgcttgagcactatatgctgatgtatgttcactttga 75352  T
Q  171 cagagaaaaacatcaactcaaggaaatcaaacagaagttactgaaggcagttatagtgttggtactggatcaacaaatactgatgtgggggtaaatggta 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |    
T  75351 cagagaaaaacatcaactcaaggaaatcaaacagaagttactgaaggcagttttagtgttggtactggatcaacaaacactgaagtgggggtaaatggga 75252  T
Q  271 ataagaaaatgaagctgattaaatctgctatcaacaaaagtaaattcaagccacctacacagtctcttccgtacatactagttaaagctccagtcaccaa 370  Q
    ||||||||| ||||||| | |||||||||||   || | ||||||||||||||||| |||| |||||||| | || || |||||||||||||||||||||    
T  75251 ataagaaaaggaagctggtgaaatctgctatgtgcataggtaaattcaagccacctgcacattctcttccttccagaccagttaaagctccagtcaccaa 75152  T
Q  371 acctacagttgcatttatgtcaacctacatgaaaccaacttcatccacaactgtcaaccccactgcacaggttc 444  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  75151 acctacagttgcatttatgtcaacctacatgaaaccaaattcatccacagctgtcaaccccactgcacaggttc 75078  T

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Target: scaffold0018; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 75534 - 75473
Alignment:
Q  1 agaccaatccagttcaaactcaagcaagtcaaagtgaggggactaatccagttcaaactcaa 62  Q
    |||||||||||||||||||| ||||||||||||||| ||||   ||||||||||| ||||||    
T  75534 agaccaatccagttcaaactgaagcaagtcaaagtgggggggtcaatccagttcagactcaa 75473  T

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Target: scaffold0018; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 75555 - 75515
Alignment:
Q  19 ctcaagcaagtcaaagtgaggggactaatccagttcaaact 59  Q
    |||||||||||||||||| || ||| |||||||||||||||    
T  75555 ctcaagcaagtcaaagtggggagaccaatccagttcaaact 75515  T

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Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 61 - 444
Target Start/End: Original strand, 32620165 - 32620539
Alignment:
Q  61 aagttggtaaagttcaaaggaaggtaaattgtttattagatgctctactaatttgttcattatatgctactaaattgcttattatatatgctgatgtata 160  Q
    |||||| ||||||||||||||||||||||||||||||| |||||  ||||||||||| ||||||||| ||||| ||| |||||||||  |||            
T  32620165 aagttgataaagttcaaaggaaggtaaattgtttattatatgct--actaatttgtttattatatgcaactaatttgtttattatat--gct-------- 32620252  T
Q  161 ttaactttgacagagaaaaacatcaactcaaggaaatcaaacagaagttactgaaggcagttatagtgttggtactggatcaacaaatactgatgtgggg 260  Q
       ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||    
T  32620253 ---actttgacagagaaaaacatcaacttaaggaaatcaaacagaagttactgaaggcagttttagtgttggtactggatcaacaaacactgaagtgggg 32620349  T
Q  261 gtaaatggtaataagaaaatgaagctgattaaatctgctatcaacaaaagtaaattcaagc------cacctacacagtctcttccgtacatactagtta 354  Q
    |||||||  |||||||||| ||||||| |||||||||||||   |||  ||||||||||||      ||||| |||| |||||||| | || || |||||    
T  32620350 gtaaatgagaataagaaaaggaagctggttaaatctgctatgtgcaatggtaaattcaagccacctgcacctgcacattctcttccttccagaccagtta 32620449  T
Q  355 aagctccagtcaccaaacctacagttgcatttatgtcaacctacatgaaaccaacttcatccacaactgtcaaccccactgcacaggttc 444  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  32620450 aagctccaatcaccaaacctacagttgcatttatgtcaacctacatgaaaccaaattcatccacagctgtcaaccccactgcacaggttc 32620539  T

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Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 164 - 444
Target Start/End: Complemental strand, 21974311 - 21974025
Alignment:
Q  164 actttgacagagaaaaacatcaactcaaggaaatcaaacagaagttactgaaggcagttatagtgttggtactggatcaacaaatactgatgtgggggta 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||    
T  21974311 actttgacagagaaaaacatcaactcaaggaaatcaaacagaagttactgaaggcagttttagtgttggtactggatcaacaaacactgaagtgggggta 21974212  T
Q  264 aatggtaataagaaaatgaagctgattaaatctgctatcaacaaaagtaaattcaagc------cacctacacagtctcttccgtacatactagttaaag 357  Q
    ||||| |||||||||| ||||||| |||||||||||||   |||  ||||||||||||      ||||| |||| |||||||| | || || ||||||||    
T  21974211 aatgggaataagaaaaggaagctggttaaatctgctatgtgcaatggtaaattcaagccacctgcacctgcacattctcttccttccagaccagttaaag 21974112  T
Q  358 ctccagtcaccaaacctacagttgcatttatgtcaacctacatgaaaccaacttcatccacaactgtcaaccccactgcacaggttc 444  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21974111 ctccaatcaccaaacctacagttgcatttatgtcaacctacatgaaaccaaattcatccacaactgtcaaccccactgcacaggttc 21974025  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 21974377 - 21974309
Alignment:
Q  61 aagttggtaaagttcaaaggaaggtaaattgtttattagatgctctactaatttgttcattatatgctact 131  Q
    |||||| ||||||||||||||||||||||||||||||| |||  ||||||||||||| |||||||||||||    
T  21974377 aagttgataaagttcaaaggaaggtaaattgtttattatatg--ctactaatttgtttattatatgctact 21974309  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21974509 - 21974453
Alignment:
Q  1 agaccaatccagttcaaactcaagcaagtcaaagtgaggggactaatccagttcaaa 57  Q
    |||||||||||||||||||| ||| |||||||||||  ||| | |||||||||||||    
T  21974509 agaccaatccagttcaaactgaagtaagtcaaagtggaggggccaatccagttcaaa 21974453  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 21974467 - 21974409
Alignment:
Q  4 ccaatccagttcaaactcaagcaagtcaaagtgaggggactaatccagttcaaactcaa 62  Q
    ||||||||||||||| | ||||||||||||||| |||| | |||||| |||| ||||||    
T  21974467 ccaatccagttcaaattgaagcaagtcaaagtgggggggccaatccaattcagactcaa 21974409  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 21974530 - 21974485
Alignment:
Q  19 ctcaagcaagtcaaagtgaggggactaatccagttcaaactcaagt 64  Q
    |||||||||||||||||| || ||| ||||||||||||||| ||||    
T  21974530 ctcaagcaagtcaaagtggggagaccaatccagttcaaactgaagt 21974485  T

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Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 164 - 444
Target Start/End: Original strand, 44479867 - 44480153
Alignment:
Q  164 actttgacagagaaaaacatcaactcaaggaaatcaaacagaagttactgaaggcagttatagtgttggtactggatcaacaaatactgatgtgggggta 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||    
T  44479867 actttgacagagaaaaacatcaactcaaggaaatcaaacagaagttactgaaggcagttttagtgttggtactggatcaacaaacactgaagtgggggta 44479966  T
Q  264 aatggtaataagaaaatgaagctgattaaatctgctatcaacaaaagtaaattcaagc------cacctacacagtctcttccgtacatactagttaaag 357  Q
    ||||| |||||||||| ||||||| |||||||||||||   |||  ||||||||||||      ||||| |||| |||||||| | || || ||||||||    
T  44479967 aatgggaataagaaaaggaagctggttaaatctgctatgtgcaatggtaaattcaagccacctgcacctgcacattctcttccttccagaccagttaaag 44480066  T
Q  358 ctccagtcaccaaacctacagttgcatttatgtcaacctacatgaaaccaacttcatccacaactgtcaaccccactgcacaggttc 444  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44480067 ctccaatcaccaaacctacagttgcatttatgtcaacctacatgaaaccaaattcatccacaactgtcaaccccactgcacaggttc 44480153  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 44479801 - 44479869
Alignment:
Q  61 aagttggtaaagttcaaaggaaggtaaattgtttattagatgctctactaatttgttcattatatgctact 131  Q
    |||||| ||||||||||||||||||||||||||||||| |||  ||||||||||||| |||||||||||||    
T  44479801 aagttgataaagttcaaaggaaggtaaattgtttattatatg--ctactaatttgtttattatatgctact 44479869  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 44479669 - 44479725
Alignment:
Q  1 agaccaatccagttcaaactcaagcaagtcaaagtgaggggactaatccagttcaaa 57  Q
    |||||||||||||||||||| ||| |||||||||||  ||| | |||||||||||||    
T  44479669 agaccaatccagttcaaactgaagtaagtcaaagtggaggggccaatccagttcaaa 44479725  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 44479711 - 44479769
Alignment:
Q  4 ccaatccagttcaaactcaagcaagtcaaagtgaggggactaatccagttcaaactcaa 62  Q
    ||||||||||||||| | ||||||||||||||| |||| | |||||| |||| ||||||    
T  44479711 ccaatccagttcaaattgaagcaagtcaaagtgggggggccaatccaattcagactcaa 44479769  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 44479648 - 44479693
Alignment:
Q  19 ctcaagcaagtcaaagtgaggggactaatccagttcaaactcaagt 64  Q
    |||||||||||||||||| || ||| ||||||||||||||| ||||    
T  44479648 ctcaagcaagtcaaagtggggagaccaatccagttcaaactgaagt 44479693  T

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