View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12114_low_8 (Length: 447)
Name: NF12114_low_8
Description: NF12114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12114_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 9 - 429
Target Start/End: Complemental strand, 40633896 - 40633476
Alignment:
| Q |
9 |
aacctgtgacagcaatacacaatgaccgatgaatggccataaacaagcattaatagtctaatgatgtaaccatcagggaagtactccaatttttcaggag |
108 |
Q |
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| T |
40633896 |
aacctgtaacagcaatgcacaatgaccaatgaatggccataaacaagcattaatagtctaatgctgtaaccatcagggaagtacttcaatttttcaggag |
40633797 |
T |
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| Q |
109 |
tactccattaaaatagaaaccgggttgaaaatgtaacaaaatcatgatgacgctaatttaacctggcataatataaatttacttgtacaattcaagttta |
208 |
Q |
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| T |
40633796 |
tactccattaaaataggaaccggcttgaaaatgtaacaaaatcatgatgacactaatttaacctggcataatataaatttacttgtacaattcaagttta |
40633697 |
T |
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| Q |
209 |
aatcagctataatgatttaaaaatgagctcaaagggaatacaataatttggagcttagacaattaaatgctaaggattttgactcagctcaagcctacta |
308 |
Q |
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| T |
40633696 |
aatcagctataatgatttaaaaatgagctcaaagggaatacaataatttggagcttagacaattaaatgctaaggattttgactcagctcaagcctacta |
40633597 |
T |
|
| Q |
309 |
ctaaaagagtgacatttgaagtgacggtggattagaggaagtcaggcaacctgatacccttcaacnnnnnnnttcagtttttctatttcaccaacagcag |
408 |
Q |
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| T |
40633596 |
ctaaaagagtgacatttgaagtgacggtggattagaggaagtcaggcaacctgatacccttcgacaaaaagtttcagtttttctatttcaccaacagcag |
40633497 |
T |
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| Q |
409 |
aaagccattcagtaagaatct |
429 |
Q |
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| T |
40633496 |
aaagccattcagtaagaatct |
40633476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 381 - 429
Target Start/End: Original strand, 41236177 - 41236225
Alignment:
| Q |
381 |
ttcagtttttctatttcaccaacagcagaaagccattcagtaagaatct |
429 |
Q |
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| T |
41236177 |
ttcagtttttctatttcaccaatagcggaaagccattcagtaagaatct |
41236225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 348
Target Start/End: Original strand, 41236024 - 41236152
Alignment:
| Q |
218 |
taatgatttaaaaatgagctcaaagggaatacaataatttggagcttagacaattaaatgctaaggattttgactcagctcaagcctactactaaaagag |
317 |
Q |
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| T |
41236024 |
taatggtttcaaaatgaccacaaaagaaatacaaaaatt-ggagcttagataataaaa-gctaatcattttgacttagttcaagcctactactaagttat |
41236121 |
T |
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| Q |
318 |
tgacatttgaagtgacggtggattagaggaa |
348 |
Q |
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| T |
41236122 |
tgaagtttgaagtgatgatggattagaggaa |
41236152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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