View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12115_high_8 (Length: 244)
Name: NF12115_high_8
Description: NF12115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12115_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 54786804 - 54786589
Alignment:
| Q |
18 |
cttatcaaaaccaaaatctatttacaaaaaagagaattcacttcagttaataataaataaattatttgcaatgatattaatcaacatgtgtcaggaagga |
117 |
Q |
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| T |
54786804 |
cttatcaaaaccaaaatctatttacaaaaaagagaattcacttcagttaataataaataaat-atttgcaatgatattaatcaacatgtgtcaggaagga |
54786706 |
T |
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| Q |
118 |
acgaacttacatagccaatcaccctgataaaagtgctcattacttgcccaatttgtgaagttaatttttggatcccaagtataccttccacctccaaccc |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54786705 |
acgaacttacatagccaatcaccctggtaaaagtgctcattacttgcccaatttgtgaagttaatttttggatcccaagtataccttccacctccaaccc |
54786606 |
T |
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| Q |
218 |
tgtgcaacacaggttct |
234 |
Q |
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||||||||||||||||| |
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| T |
54786605 |
tgtgcaacacaggttct |
54786589 |
T |
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