View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12115_low_4 (Length: 393)

Name: NF12115_low_4
Description: NF12115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12115_low_4
NF12115_low_4
[»] chr8 (17 HSPs)
chr8 (18-393)||(36209249-36209624)
chr8 (38-393)||(36196140-36196501)
chr8 (37-393)||(36183879-36184240)
chr8 (281-393)||(36188068-36188180)
chr8 (37-216)||(36199592-36199771)
chr8 (108-221)||(36187709-36187818)
chr8 (95-219)||(36211800-36211922)
chr8 (95-217)||(36190364-36190484)
chr8 (289-365)||(36201781-36201857)
chr8 (287-375)||(36211982-36212070)
chr8 (165-242)||(36208642-36208720)
chr8 (186-219)||(36215577-36215610)
chr8 (319-378)||(36200335-36200395)
chr8 (116-219)||(36197806-36197909)
chr8 (289-356)||(36214279-36214346)
chr8 (287-373)||(36190546-36190632)
chr8 (99-219)||(36214079-36214199)


Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 36209249 - 36209624
Alignment:
Q  18 actttggtgggtagagtctaattagattaaggaatgattaaatttcacacctccgcctgaaattgaaaaataaaataagccaaacatcaagctacagagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36209249 actttggtgggtagagtctaattagattaaggaatgattaaatttcacacctccgcctgaaattgaaaaataaaataagccaaacatcaagctacagagt 36209348  T
Q  118 ctatcatctaaagcataatgaatggtgtttaaaagagttgagatagtatcaaatgacatcaaccaaacagactactaaattataaaacttgtattccaag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36209349 ctatcatctaaagcataatgaatggtgtttaaaagagttgagatagtatcaaatgacatcaaccaaacagactaataaattataaaacttgtattccaag 36209448  T
Q  218 gatctgtgtagaaaaatcgacaaaacatctcctaaaattttgagatttcaaacattgtacaataattatacaattatttatcaggtcaaagcatagcctt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36209449 gatctgtgtagaaaaatcgacaaaacatctcctaaaattttgagatttcaaacattgtacaataattatacaattatttatcaggtcaaagcatagcctt 36209548  T
Q  318 gcactccaagttaatattcaaaaatctaaattaaactttgaaaataaaacagctacaatatgttatactatttagc 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36209549 gcactccaagttaatattcaaaaatctaaattaaactttgaaaataaaacagctacaatatgttatactatttagc 36209624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 38 - 393
Target Start/End: Original strand, 36196140 - 36196501
Alignment:
Q  38 attagattaaggaatgattaaatttcacacctccgcctgaaattgaaaaataaaataagccaaacatcaagctacagagtctatcatctaaagcataatg 137  Q
    |||||||||||||| |||||||||||||||| ||   ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||    
T  36196140 attagattaaggaaagattaaatttcacaccacc---tgaaattgaaaaataaaataagccaaacaacaagctacagagtctatcatgtaacgcataatg 36196236  T
Q  138 aatggtgtttaaaagagttgagatagtatcaaatgacatcaaccaaacagactactaaattataaaacttgtattccaaggatctgtgtagaaaaatcga 237  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  36196237 aatgatgtttaaaagagttgagatagtatcaaatgacatcaaccaaacagactactaaattataaaactcgtattgcaaggatctgtgtagaaaaatcga 36196336  T
Q  238 caaaacatctcctaaaattttgagatttcaaacattgtaca---------ataattatacaattatttatcaggtcaaagcatagccttgcactccaagt 328  Q
    |||||||||||||||||| |||||||||||||||| |||||         | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36196337 caaaacatctcctaaaatattgagatttcaaacatagtacaaaagcctttacaattatacaattatttatcaggtcaaagcatagccttgcactccaagt 36196436  T
Q  329 taatattcaaaaatctaaattaaactttgaaaataaaacagctacaatatgttatactatttagc 393  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  36196437 taatattaaaaaatctaaattaaaatttgaaaataaaacagctacaatatgctatactatttagc 36196501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 37 - 393
Target Start/End: Original strand, 36183879 - 36184240
Alignment:
Q  37 aattagattaaggaatgattaaatttcacacctccgcctgaaattgaaaaataaaataagccaaacatcaagctacagagtctatcatctaaagc-ataa 135  Q
    |||||||||| ||||  |||||||||||   ||||  ||||||||||||||| ||||||||||||||||||||||  |||||||| ||||||||| |||     
T  36183879 aattagattagggaaacattaaatttcaggtctccatctgaaattgaaaaattaaataagccaaacatcaagctagggagtctattatctaaagccatag 36183978  T
Q  136 tgaatggtgtttaaaagagttgagatagtatcaaatgacatcaaccaaacagactactaaattataaaacttgtattccaaggatctgtgtagaaaaatc 235  Q
      |||| |||||||| ||||| |||||| ||||||||| || ||||||| ||||||||||       ||| ||||||||||||||||||||||||||||     
T  36183979 caaatgatgtttaaacgagttaagatagcatcaaatga-attaaccaaatagactactaag------aacctgtattccaaggatctgtgtagaaaaata 36184071  T
Q  236 gacaaaacatctcctaaaattttgagatttcaaacattgtacaataa----------ttatacaattatttatcaggtcaaag-catagccttgcactcc 324  Q
    |||||||||||||||||||| |||||||||||||||| |||||| |           ||||||||||||||||| |||||||  ||||||||| |||||     
T  36184072 gacaaaacatctcctaaaatattgagatttcaaacatagtacaaaagcctttacaatttatacaattatttatccggtcaaaaacatagccttacactca 36184171  T
Q  325 aagttaatattcaaaaatctaaattaaactttgaaaataaaacagctacaatatgttatactatttagc 393  Q
    |||||||| ||||||| |||||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  36184172 aagttaattttcaaaattctaaacttaactttgaaaataaaacagttacaatatgttatactatttagc 36184240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 281 - 393
Target Start/End: Original strand, 36188068 - 36188180
Alignment:
Q  281 aattatacaattatttatcaggtcaaagcatagccttgcactccaagttaatattcaaaaatctaaattaaactttgaaaataaaacagctacaatatgt 380  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  36188068 aattatacaattatttatcaggtcaaaccatagccttgcactccaagttaatattcaaaattctaaattaaactttgaaaattaaacagttacaatatgt 36188167  T
Q  381 tatactatttagc 393  Q
    |||||||||||||    
T  36188168 tatactatttagc 36188180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 37 - 216
Target Start/End: Original strand, 36199592 - 36199771
Alignment:
Q  37 aattagattaaggaatgattaaatttcacacctccgcctgaaattgaaaaataaaataagccaaacatcaagctacagagtctatcatctaaagcataat 136  Q
    |||||||||| |||| ||||||||||||  ||||| |||||||||||||||| ||||||||||||||||||||| |  ||||||| ||||||| ||||||    
T  36199592 aattagattagggaaagattaaatttcatgcctccacctgaaattgaaaaatgaaataagccaaacatcaagctgcgtagtctattatctaaaacataat 36199691  T
Q  137 gaatggtgtttaaaagagttgagatagtatcaaatgacatcaaccaaacagactactaaattataaaacttgtattccaa 216  Q
    ||||| |||||||||||  |  ||||||||||||||||||   |  |||||||||||||||| |||||| ||||||||||    
T  36199692 gaatgttgtttaaaagatatatgatagtatcaaatgacatttgcagaacagactactaaattttaaaacctgtattccaa 36199771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 108 - 221
Target Start/End: Original strand, 36187709 - 36187818
Alignment:
Q  108 gctacagagtctatcatctaaagcataatgaatggtgtttaaaagagttgagatagtatcaaatgacatcaaccaaacagactactaaattataaaactt 207  Q
    |||||||||| |||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||     ||||||||||||||| ||||||    
T  36187709 gctacagagtatatcatctaaaatataatgaatggtgtttaaaagagttgaggtagtatcaaatgacatcaac----gagactactaaattatgaaactt 36187804  T
Q  208 gtattccaaggatc 221  Q
    |||||| |||||||    
T  36187805 gtattctaaggatc 36187818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 95 - 219
Target Start/End: Original strand, 36211800 - 36211922
Alignment:
Q  95 agccaaacatcaagctacagagtctatcatctaaagcataatgaatggtgtttaaaagagttgagatagtatcaaatgacatcaaccaaacagactacta 194  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||  ||||||| ||| ||  ||||| |||||||||||| | ||||| ||| |||||    
T  36211800 agccaaacatcaagctacagggtctatcatctaaaacataatg-atactgtttaagagattttggataggatcaaatgacattagccaaa-agagtacta 36211897  T
Q  195 aattataaaacttgtattccaagga 219  Q
      |||||||||||||||||||||||    
T  36211898 tgttataaaacttgtattccaagga 36211922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 36190364 - 36190484
Alignment:
Q  95 agccaaacatcaagctacagagtctatcatctaaagcataatgaatggtgtttaaaagagttgagatagtatcaaatgacatcaaccaaacagactacta 194  Q
    ||||||||||||||| |||| |||||||||||||| |||||||| |  | ||||| ||| ||  ||||| |||||||||||| | ||||| |||||||||    
T  36190364 agccaaacatcaagccacagggtctatcatctaaaacataatga-tactatttaagagattttggataggatcaaatgacattagccaaa-agactacta 36190461  T
Q  195 aattataaaacttgtattccaag 217  Q
      ||||||||||||||| |||||    
T  36190462 tgttataaaacttgtatcccaag 36190484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 36201781 - 36201857
Alignment:
Q  289 aattatttatcaggtcaaagcatagccttgcactccaagttaatattcaaaaatctaaattaaactttgaaaataaa 365  Q
    ||||||||||| ||| ||| ||||||||||||||| || | | ||| ||||| ||||||| ||||||||||||||||    
T  36201781 aattatttatctggttaaaacatagccttgcactcaaaatcattatccaaaattctaaatgaaactttgaaaataaa 36201857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 375
Target Start/End: Original strand, 36211982 - 36212070
Alignment:
Q  287 acaattatttatcaggtcaaagcatagccttgcactccaagttaatattcaaaaatctaaattaaactttgaaaataaaacagctacaa 375  Q
    ||||||| ||||||  | ||| ||||||||| ||||| |  | ||||| ||||| ||||||||||||||||||||||||||| ||||||    
T  36211982 acaattacttatcatattaaaacatagccttacactctagatcaatatccaaaattctaaattaaactttgaaaataaaacaactacaa 36212070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 36208642 - 36208720
Alignment:
Q  165 atcaaatgacatcaaccaaacagactactaaattataaaacttgtattccaagg-atctgtgtagaaaaatcgacaaaa 242  Q
    |||||||||||| | | |||||||| |||||||||||||||||||||  ||||| || ||| |||||||||| ||||||    
T  36208642 atcaaatgacattagctaaacagaccactaaattataaaacttgtatagcaaggaatttgtatagaaaaatcaacaaaa 36208720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 36215577 - 36215610
Alignment:
Q  186 agactactaaattataaaacttgtattccaagga 219  Q
    ||||||||||||||||||||||||||||||||||    
T  36215577 agactactaaattataaaacttgtattccaagga 36215610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 36200335 - 36200395
Alignment:
Q  319 cactccaagttaatattcaaaaatctaaatt-aaactttgaaaataaaacagctacaatat 378  Q
    |||||||| ||||||| ||||| |||||| | |||||||||||| ||||||||||||||||    
T  36200335 cactccaaattaatatccaaaattctaaaatgaaactttgaaaacaaaacagctacaatat 36200395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 36197806 - 36197909
Alignment:
Q  116 gtctatcatctaaagcataatgaatggtgtttaaaagagttgagatagtatcaaatgacatcaaccaaacagactactaaattataaaacttgtattcca 215  Q
    |||||||||||||| |||||||     ||||||| ||| ||  ||||| |||||||||||| | ||||| |||||||||  |||||||||||| || |||    
T  36197806 gtctatcatctaaaacataatggtaattgtttaagagattttggataggatcaaatgacattagccaaaaagactactatgttataaaacttgcatccca 36197905  T
Q  216 agga 219  Q
    ||||    
T  36197906 agga 36197909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 36214279 - 36214346
Alignment:
Q  289 aattatttatcaggtcaaagcatagccttgcactccaagttaatattcaaaaatctaaattaaacttt 356  Q
    ||||||||||||||||||| ||||| ||| |||||||| | | ||| ||||| ||||||| |||||||    
T  36214279 aattatttatcaggtcaaaacatagacttacactccaaatcagtatccaaaattctaaatgaaacttt 36214346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 373
Target Start/End: Original strand, 36190546 - 36190632
Alignment:
Q  287 acaattatttatcaggtcaaagcatagccttgcactccaagttaatattcaaaaatctaaattaaactttgaaaataaaacagctac 373  Q
    ||||||| ||||||  | ||| ||||||||| ||||| |  | ||||| ||||| | ||||||||||||||||||||||||| ||||    
T  36190546 acaattacttatcatattaaaacatagccttacactctagatcaatatccaaaattttaaattaaactttgaaaataaaacaactac 36190632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 36214079 - 36214199
Alignment:
Q  99 aaacatcaagctacagagtctatcatctaaagcataatgaatggtgtttaaaagagttgagatagtatcaaatgacatcaaccaaacagactact-aaat 197  Q
    |||||||||||||||||| |||| | ||||| ||  ||  | | |||||||||||   ||||||  |||||||||||| | ||||||| |||||| ||||    
T  36214079 aaacatcaagctacagagactataaactaaaacaagattgaagttgtttaaaagatacgagataagatcaaatgacattagccaaacatactactaaaat 36214178  T
Q  198 tataaaacttgtattccaagga 219  Q
    ||| ||||||||||||| ||||    
T  36214179 tat-aaacttgtattccgagga 36214199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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