View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12115_low_5 (Length: 364)
Name: NF12115_low_5
Description: NF12115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12115_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 24559119 - 24558782
Alignment:
| Q |
19 |
agtggtgatatcacaaagaggaaaatggtgacggtagcttggaggaaaatatgcagagactttgaagaaggtggactagggctcaaatctctcatatgtt |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
24559119 |
agtggtgatatcacaaagaggaaaatggtgacggtagcttggaggaaaatatgcacagacttggaagagggtggactagggctcaaatctctcatatgtt |
24559020 |
T |
|
| Q |
119 |
tgaatgaagctactaacctgaaaatgtgttggaacttacttcagtcagatgagcaatgggtaatcataattagaagcagagttttaagagaccataaatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24559019 |
tgaatgaagctactaacctgaaaatgtgttggaacttactccagtcagatgagcaatgggcaatcataattagaagcagagttttaagagaccataaatg |
24558920 |
T |
|
| Q |
219 |
cattaatcatcacatcttctcatctatatggagtggagttaaaggtgaatttcaagttatcatgaacaactgctcttggatagttggtaatgggaaacaa |
318 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24558919 |
cattaatcaccacatcttctcatctatctggagtggagttaaaggtgaatttcaagttatcatgaacaactgctcttggatagttggtaatgggaaacaa |
24558820 |
T |
|
| Q |
319 |
ataaatttttggtcagactcttggtgtgcacaggttct |
356 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |||| |
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| T |
24558819 |
ataaatttttggtcagactcttggtgtggacagattct |
24558782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 13140419 - 13140082
Alignment:
| Q |
19 |
agtggtgatatcacaaagaggaaaatggtgacggtagcttggaggaaaatatgcagagactttgaagaaggtggactagggctcaaatctctcatatgtt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
13140419 |
agtggtgatatcacaaagaggaaaatggtgacggtagcttggaggaaaatatgcacagacttggaagagggtggactagggctcaaatctctcatatgtt |
13140320 |
T |
|
| Q |
119 |
tgaatgaagctactaacctgaaaatgtgttggaacttacttcagtcagatgagcaatgggtaatcataattagaagcagagttttaagagaccataaatg |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13140319 |
tgaatgaagctactaatctgaaaatgtgttggaacttactccagtcagatgagcaatgggcaatcataattagaagcagagttttaagagaccataaatg |
13140220 |
T |
|
| Q |
219 |
cattaatcatcacatcttctcatctatatggagtggagttaaaggtgaatttcaagttatcatgaacaactgctcttggatagttggtaatgggaaacaa |
318 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13140219 |
cattaatcaccacatcttctcatctatctggagtggagttaaaggtgaatttcaagttatcatgaacaactgctcttggatagttggtaatgggaaacaa |
13140120 |
T |
|
| Q |
319 |
ataaatttttggtcagactcttggtgtgcacaggttct |
356 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||| |
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| T |
13140119 |
ataaatttttggtcagactcttggtgtggacagattct |
13140082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 13143201 - 13142864
Alignment:
| Q |
19 |
agtggtgatatcacaaagaggaaaatggtgacggtagcttggaggaaaatatgcagagactttgaagaaggtggactagggctcaaatctctcatatgtt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13143201 |
agtggtgatatcacaaagaggaaaatggtaacggtagcttggaagaaaatatgcacagactttgaagagggtggactagggctcaaatctctcatatgtt |
13143102 |
T |
|
| Q |
119 |
tgaatgaagctactaacctgaaaatgtgttggaacttacttcagtcagatgagcaatgggtaatcataattagaagcagagttttaagagaccataaatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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|
| T |
13143101 |
tgaatgaagctactaacctgaaaatgtgttggaacttactccagtcagatgagcaatgggcaatcataattagaaacagagttttaagagaccataaatg |
13143002 |
T |
|
| Q |
219 |
cattaatcatcacatcttctcatctatatggagtggagttaaaggtgaatttcaagttatcatgaacaactgctcttggatagttggtaatgggaaacaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13143001 |
cattaatcatcacatcttctcatctatatggagtggagttaaaggtgaatttcaagttatcatgaacaacagctcttggatagttggtaatgggaaacaa |
13142902 |
T |
|
| Q |
319 |
ataaatttttggtcagactcttggtgtgcacaggttct |
356 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| |
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| T |
13142901 |
ataaatttttggtcagactcttggtctggacaggttct |
13142864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 31 - 353
Target Start/End: Complemental strand, 34244018 - 34243696
Alignment:
| Q |
31 |
acaaagaggaaaatggtgacggtagcttggaggaaaatatgcagagactttgaagaaggtggactagggctcaaatctctcatatgtttgaatgaagcta |
130 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||||||||| || ||||| |||||| || || |||||| | |||||||| || || ||||||||||||| |
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|
| T |
34244018 |
acaaagagaaagatggtgacagtagcctggaggaaaatttgtgcagactatgaagagggaggtctaggggttaaatctcttatttgcttgaatgaagcta |
34243919 |
T |
|
| Q |
131 |
ctaacctgaaaatgtgttggaacttacttcagtcagatgagcaatgggtaatcataattagaagcagagttttaagagaccataaatgcattaatcatca |
230 |
Q |
| |
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| |||||||| || |||||||||||| | || |||||||||||||||| || |||||| ||||| |||||| | ||||| || | |||||| |||||||| |
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| T |
34243918 |
caaacctgaagatttgttggaacttaatgcaatcagatgagcaatgggcaaacataatcagaagtagagttattagagatcacagatgcatgaatcatca |
34243819 |
T |
|
| Q |
231 |
catcttctcatctatatggagtggagttaaaggtgaatttcaagttatcatgaacaactgctcttggatagttggtaatgggaaacaaataaatttttgg |
330 |
Q |
| |
|
||| | |||||| || |||||||| ||||| | ||| ||||| ||||||| | | || || |||||||| || || |||| ||||| |||||||| ||| |
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| T |
34243818 |
catttcctcatccatctggagtggtgttaaggctgagtttcatgttatcaaggataattgttcttggattgtaggagatggaaaacagataaatttctgg |
34243719 |
T |
|
| Q |
331 |
tcagactcttggtgtgcacaggt |
353 |
Q |
| |
|
||||| || ||||||| |||||| |
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|
| T |
34243718 |
tcagattcctggtgtggacaggt |
34243696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 191 - 345
Target Start/End: Complemental strand, 37041655 - 37041501
Alignment:
| Q |
191 |
gaagcagagttttaagagaccataaatgcattaatcatcacatcttctcatctatatggagtggagttaaaggtgaatttcaagttatcatgaacaactg |
290 |
Q |
| |
|
||||||||||| | ||||| || | |||||| | ||||||||||| ||||||||| |||||||||||||| | ||||||||| ||||||| | | || || |
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|
| T |
37041655 |
gaagcagagttattagagatcacagatgcatcactcatcacatctcctcatctatttggagtggagttaaggctgaatttcatgttatcaaggataattg |
37041556 |
T |
|
| Q |
291 |
ctcttggatagttggtaatgggaaacaaataaatttttggtcagactcttggtgt |
345 |
Q |
| |
|
|||||||| |||||| |||| ||| | |||||||| |||||||||||||||||| |
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|
| T |
37041555 |
ttcttggattgttggtgatggaaaatagataaatttctggtcagactcttggtgt |
37041501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 37041882 - 37041809
Alignment:
| Q |
122 |
atgaagctactaacctgaaaatgtgttggaacttacttcagtcagatgagcaatgggtaatcataattagaagc |
195 |
Q |
| |
|
|||| |||| ||||||||| ||||||||||||||||| || | ||||||| |||||| || |||||| |||||| |
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|
| T |
37041882 |
atgaggctattaacctgaagatgtgttggaacttactgcaataagatgagtaatggggaaacataatcagaagc |
37041809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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