View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12115_low_6 (Length: 295)
Name: NF12115_low_6
Description: NF12115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12115_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 280
Target Start/End: Complemental strand, 53492982 - 53492720
Alignment:
| Q |
29 |
ttgattccatgttcttgaattctctaattggagttccatccacagagaaactgaaataaatatacacagagagaatagtctaatttagtttcttccaaca |
128 |
Q |
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| T |
53492982 |
ttgattcaatgttcttgaattctctaattggagttccatccacagagaaactgaaataaatatacacagagagaatagtctaatttagtttcttccaaca |
53492883 |
T |
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| Q |
129 |
caagtaatgnnnnnnnnnnna-----------ttgattttattttaagattgtatagaatatattgatttagtacttacacaatacgttgaggattccat |
217 |
Q |
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| T |
53492882 |
caagtaatgtttttttttttaaattttttttattgattttatttcaagattgtatagaatatattgatttagaacttacacaatacgttgtggattccat |
53492783 |
T |
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| Q |
218 |
agaattgagtatgtgtgaaaatctgcagttgggtcaaaccaaaggtaaaattgttgctctctg |
280 |
Q |
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| T |
53492782 |
agaattgagtatgtgtgaaaatctgcagttgggtcaaaccaaaggtaaatttgttgctctctg |
53492720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 53499284 - 53499025
Alignment:
| Q |
19 |
ggtacaccatttgattccatgttcttgaattctctaattggagttccatccacagagaaactgaaataaatatacacagagagaatagtctaatttagtt |
118 |
Q |
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| T |
53499284 |
ggtacaccatttgattccatgttcttgaattccctaattggagttccatctacagagaaactgaaaaa----tacacaaagaaaatagtctaatttagtt |
53499189 |
T |
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| Q |
119 |
tcttccaacacaagtaatgnnnnnnnnnnn--attgattttattttaagattgtatagaatatattgatttagtacttacacaatacgttgaggattcca |
216 |
Q |
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| T |
53499188 |
gcttcgaacacaagcaatgtttttttttttttattgattttattttaagattgtatagaatatattgatttagtacttacacaatacgttgaggattcca |
53499089 |
T |
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| Q |
217 |
tagaattgagtatgtgtgaaaatctgcagttgggtcaaaccaaaggtaaaattgttgctctctg |
280 |
Q |
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| T |
53499088 |
tagaattgagtatgtgtgaaaatctgcagttgggtcaaaccaaaggtaaaattgttgctctctg |
53499025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 53495155 - 53495068
Alignment:
| Q |
192 |
cttacacaatacgttgaggattccatagaattgagtatgtgtgaaaatctgcagttgggtcaaaccaaaggtaaaattgttgctctct |
279 |
Q |
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| T |
53495155 |
cttacacaatgcgttgaggattccaaagaatggagtatgtgtgaaaatcagcagttggatcaaaccatagatggaattgttgttctct |
53495068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 53495369 - 53495316
Alignment:
| Q |
28 |
tttgattccatgttcttgaattctctaattggagttccatccacagagaaactg |
81 |
Q |
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| T |
53495369 |
tttgattccatgttcttgaattctcttattggtgttccatccacagaaaaactg |
53495316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 40320187 - 40320262
Alignment:
| Q |
186 |
ttagtacttacacaatacgttgaggattccatagaattgagtatgtgtgaaaatctgcagttgggtcaaaccaaag |
261 |
Q |
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| T |
40320187 |
ttagtacttacacaatatggtgatgattccaaagaatggagtaagtgtggaaatcagcagaaggatcaaaccaaag |
40320262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 280
Target Start/End: Complemental strand, 37188755 - 37188660
Alignment:
| Q |
185 |
tttagtacttacacaatacgttgaggattccatagaattgagtatgtgtgaaaatctgcagttgggtcaaaccaaaggtaaaattgttgctctctg |
280 |
Q |
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| T |
37188755 |
tttagtacttacacaattcgttgtgggttccagaggatggaataagtgtgaaaatctgcagttgggtcaaaccataggtagaattgttgctctctg |
37188660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 37188915 - 37188853
Alignment:
| Q |
22 |
acaccatttgattccatgttcttgaattctctaattggagttccatccacagagaaactgaaa |
84 |
Q |
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| T |
37188915 |
acaccatttgattccatgtttttgaattccctaattggacttccatccacagagaaactgaaa |
37188853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 43347431 - 43347380
Alignment:
| Q |
231 |
tgtgaaaatctgcagttgggtcaaaccaaaggtaaaattgttgctctctgct |
282 |
Q |
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| T |
43347431 |
tgtgaaaatcagcagttgggtcaaaccagaggtgaaattgttgctctctgct |
43347380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 33449645 - 33449594
Alignment:
| Q |
233 |
tgaaaatctgcagttgggtcaaaccaaaggtaaaattgttgctctctgcttc |
284 |
Q |
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| T |
33449645 |
tgaaaatcagcagttgggtcaaaccaaagataaaattgttgctctctacttc |
33449594 |
T |
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