View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12115_low_7 (Length: 285)
Name: NF12115_low_7
Description: NF12115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12115_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 1511959 - 1512223
Alignment:
| Q |
17 |
agtttgcaaagggggagttcaaggaacttacttgactagggatgtgcttgccactgagcaggtcaagaagaacagttccaaagctctaaatgacactttc |
116 |
Q |
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| T |
1511959 |
agtttgcaaagggggagttcaaggaacttacttgactagggatgtgcttgccactgagtaggtcaagaagaacagttccaaagctctaaatgacactttc |
1512058 |
T |
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| Q |
117 |
aggggtgacccttcctgcaacaataaaagaatatattaattagagacggtgcaatttattattgtgtgagaaaacaaagaatgaaagagagaatacgtaa |
216 |
Q |
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| T |
1512059 |
aggggtgacccttcctgcaacaataaaagaatatattaattagagacggtgcaatttattattgtgtgagaaaacaaagaatgaaagagagaatacgtaa |
1512158 |
T |
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| Q |
217 |
agaatcatttcttaaatacacggtgcaatttatttgtgctataacttttcccatctctgctgctc |
281 |
Q |
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| T |
1512159 |
agaatcatttcttaaatacacggtgcaatttatttgtgctataacttttcccatccctactgctc |
1512223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 43337225 - 43337449
Alignment:
| Q |
17 |
agtttgcaaagggggagttcaaggaacttacttgact---agggatgtgcttgccactgagcaggtcaagaagaacagttccaaagctctaaatgacact |
113 |
Q |
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||||| |||||| |||||| ||| ||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
43337225 |
agttttcaaaggaggagttaaagaaacttacatgactgggagggatgtgcttgccactgagtaggtcaagaagaacagttccaaagctgtaaatgacact |
43337324 |
T |
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| Q |
114 |
ttcaggggtgacccttcctgcaacaataaaagaatatattaattagagacggtgcaattta----ttattgtgtgagaaaacaaagaatgaaagagagaa |
209 |
Q |
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| T |
43337325 |
ttcaggggtaacccttcctgcaacaataaaggaaaatattaattagagacaatgcaatttattagttagtgtgtgataaaacaaagaatgaaagagagaa |
43337424 |
T |
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| Q |
210 |
tacgtaaagaatcatttcttaaata |
234 |
Q |
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| T |
43337425 |
ttagtaaagaaccatttcttaaata |
43337449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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