View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12115_low_8 (Length: 265)

Name: NF12115_low_8
Description: NF12115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12115_low_8
NF12115_low_8
[»] chr7 (20 HSPs)
chr7 (79-251)||(19061114-19061286)
chr7 (19-83)||(36819613-36819677)
chr7 (19-82)||(38069049-38069112)
chr7 (19-80)||(16807149-16807210)
chr7 (19-80)||(35693833-35693894)
chr7 (19-80)||(30462224-30462285)
chr7 (19-80)||(25274020-25274081)
chr7 (19-80)||(37101029-37101090)
chr7 (25-80)||(40231928-40231983)
chr7 (22-80)||(35265823-35265881)
chr7 (19-82)||(32972330-32972393)
chr7 (19-74)||(38850708-38850763)
chr7 (19-81)||(28016115-28016176)
chr7 (19-80)||(9173339-9173400)
chr7 (19-80)||(18756599-18756660)
chr7 (19-63)||(47713435-47713479)
chr7 (19-82)||(32222548-32222611)
chr7 (19-50)||(46242483-46242514)
chr7 (19-73)||(40818700-40818754)
chr7 (19-83)||(40665771-40665835)
[»] chr6 (22 HSPs)
chr6 (19-83)||(24798553-24798617)
chr6 (19-80)||(2397770-2397831)
chr6 (19-80)||(2667332-2667393)
chr6 (19-80)||(17496325-17496386)
chr6 (19-80)||(2656677-2656738)
chr6 (19-80)||(29795451-29795512)
chr6 (19-80)||(30699261-30699322)
chr6 (19-80)||(32541484-32541545)
chr6 (19-82)||(9022838-9022901)
chr6 (19-85)||(24949530-24949596)
chr6 (19-88)||(995555-995624)
chr6 (19-80)||(28483037-28483099)
chr6 (19-80)||(6142514-6142575)
chr6 (19-78)||(29515033-29515092)
chr6 (19-80)||(2141568-2141629)
chr6 (19-80)||(6188663-6188724)
chr6 (19-80)||(24825165-24825226)
chr6 (19-75)||(13358514-13358570)
chr6 (19-81)||(35117279-35117341)
chr6 (19-80)||(16661609-16661670)
chr6 (19-68)||(10109418-10109467)
chr6 (19-80)||(31708893-31708954)
[»] chr3 (33 HSPs)
chr3 (19-83)||(9484593-9484657)
chr3 (19-83)||(29793376-29793440)
chr3 (19-81)||(42098625-42098687)
chr3 (19-80)||(49076424-49076485)
chr3 (19-80)||(50673677-50673738)
chr3 (21-80)||(16434857-16434916)
chr3 (19-81)||(901086-901148)
chr3 (19-80)||(12948040-12948101)
chr3 (19-80)||(29720395-29720456)
chr3 (19-80)||(34263702-34263763)
chr3 (19-82)||(34555149-34555212)
chr3 (21-80)||(46866343-46866402)
chr3 (19-80)||(29455706-29455767)
chr3 (19-80)||(48927800-48927861)
chr3 (19-75)||(34669613-34669669)
chr3 (21-81)||(53274995-53275055)
chr3 (19-78)||(14751040-14751099)
chr3 (19-81)||(44781981-44782043)
chr3 (26-83)||(2643274-2643331)
chr3 (19-84)||(29809341-29809406)
chr3 (19-80)||(38833963-38834024)
chr3 (29-75)||(38878486-38878532)
chr3 (19-80)||(36179134-36179195)
chr3 (21-77)||(1334295-1334351)
chr3 (19-83)||(1778358-1778422)
chr3 (19-80)||(4229186-4229247)
chr3 (19-80)||(18013468-18013529)
chr3 (21-82)||(52094094-52094155)
chr3 (21-80)||(36364763-36364820)
chr3 (23-79)||(53055627-53055683)
chr3 (19-58)||(43370313-43370352)
chr3 (19-80)||(4945849-4945910)
chr3 (19-80)||(28958997-28959058)
[»] chr1 (25 HSPs)
chr1 (19-82)||(45299316-45299379)
chr1 (19-80)||(8251156-8251217)
chr1 (19-80)||(10100520-10100581)
chr1 (21-80)||(52749281-52749340)
chr1 (19-81)||(10124108-10124170)
chr1 (19-80)||(5606398-5606459)
chr1 (19-80)||(6017456-6017517)
chr1 (19-83)||(1821635-1821699)
chr1 (19-74)||(26543874-26543929)
chr1 (19-80)||(7075337-7075398)
chr1 (19-80)||(41855728-41855789)
chr1 (19-80)||(44240519-44240580)
chr1 (29-80)||(5945765-5945816)
chr1 (21-84)||(8048757-8048820)
chr1 (29-80)||(28490160-28490211)
chr1 (26-80)||(31932192-31932246)
chr1 (21-75)||(44741348-44741402)
chr1 (19-65)||(48389081-48389127)
chr1 (19-80)||(2126652-2126713)
chr1 (19-80)||(29253479-29253540)
chr1 (19-80)||(36035686-36035747)
chr1 (19-80)||(41414203-41414264)
chr1 (27-67)||(31651916-31651956)
chr1 (25-80)||(12685911-12685966)
chr1 (19-78)||(44452197-44452256)
[»] scaffold0221 (1 HSPs)
scaffold0221 (19-80)||(5376-5437)
[»] chr5 (28 HSPs)
chr5 (19-80)||(1098175-1098236)
chr5 (19-81)||(20040418-20040480)
chr5 (19-80)||(1781148-1781209)
chr5 (19-80)||(40316818-40316879)
chr5 (19-80)||(41410662-41410723)
chr5 (21-80)||(19344704-19344763)
chr5 (19-80)||(1831351-1831412)
chr5 (19-80)||(14633007-14633068)
chr5 (19-80)||(31191180-31191241)
chr5 (19-66)||(20022874-20022921)
chr5 (19-81)||(13548212-13548274)
chr5 (19-77)||(14057711-14057769)
chr5 (25-77)||(14607566-14607618)
chr5 (21-81)||(30721690-30721750)
chr5 (19-74)||(30211744-30211799)
chr5 (19-80)||(27675540-27675601)
chr5 (19-80)||(41263132-41263193)
chr5 (19-73)||(2799638-2799692)
chr5 (19-73)||(8627142-8627196)
chr5 (19-73)||(34347474-34347528)
chr5 (19-80)||(33402594-33402655)
chr5 (25-83)||(9936897-9936955)
chr5 (19-80)||(30788205-30788266)
chr5 (19-80)||(32110675-32110736)
chr5 (19-71)||(2805806-2805858)
chr5 (19-82)||(40079979-40080042)
chr5 (19-81)||(10465298-10465360)
chr5 (19-67)||(41042840-41042888)
[»] chr4 (26 HSPs)
chr4 (19-80)||(10384848-10384909)
chr4 (19-82)||(31152659-31152722)
chr4 (21-80)||(55631879-55631938)
chr4 (19-80)||(37667776-37667837)
chr4 (19-80)||(40411611-40411672)
chr4 (19-84)||(46608209-46608274)
chr4 (21-75)||(39170963-39171017)
chr4 (19-81)||(48380472-48380534)
chr4 (19-80)||(3708253-3708314)
chr4 (19-80)||(43447165-43447226)
chr4 (19-81)||(8525418-8525480)
chr4 (19-80)||(39332832-39332893)
chr4 (19-83)||(31657358-31657422)
chr4 (19-82)||(6520433-6520496)
chr4 (19-80)||(28914368-28914429)
chr4 (19-80)||(43047387-43047448)
chr4 (19-78)||(48336430-48336489)
chr4 (26-80)||(28899080-28899134)
chr4 (19-80)||(1377503-1377564)
chr4 (26-83)||(39376881-39376938)
chr4 (25-82)||(42185272-42185329)
chr4 (19-83)||(33394074-33394138)
chr4 (19-74)||(1613220-1613275)
chr4 (26-80)||(24334390-24334444)
chr4 (30-80)||(44210149-44210199)
chr4 (19-80)||(23605904-23605965)
[»] chr2 (25 HSPs)
chr2 (19-78)||(7724613-7724672)
chr2 (19-81)||(12208988-12209050)
chr2 (19-78)||(31603418-31603477)
chr2 (19-80)||(8373434-8373495)
chr2 (19-79)||(16127782-16127842)
chr2 (21-80)||(40471736-40471795)
chr2 (19-81)||(16126084-16126146)
chr2 (19-81)||(16333479-16333541)
chr2 (19-80)||(8896271-8896332)
chr2 (19-80)||(41575562-41575623)
chr2 (21-81)||(5096247-5096307)
chr2 (19-83)||(38963792-38963856)
chr2 (21-82)||(10333582-10333643)
chr2 (19-67)||(11277564-11277612)
chr2 (25-80)||(4137410-4137465)
chr2 (19-80)||(41436832-41436893)
chr2 (27-80)||(37316876-37316929)
chr2 (20-80)||(6730106-6730166)
chr2 (19-63)||(37987938-37987982)
chr2 (21-84)||(18504468-18504531)
chr2 (19-81)||(20682653-20682715)
chr2 (19-80)||(2831707-2831768)
chr2 (19-80)||(22718545-22718606)
chr2 (19-51)||(44022297-44022329)
chr2 (20-80)||(45036363-45036423)
[»] chr8 (24 HSPs)
chr8 (19-81)||(25691597-25691659)
chr8 (19-81)||(30464431-30464493)
chr8 (25-80)||(23437819-23437874)
chr8 (19-82)||(14378686-14378749)
chr8 (19-81)||(761549-761611)
chr8 (19-80)||(4327119-4327180)
chr8 (19-80)||(28583303-28583364)
chr8 (19-82)||(25009142-25009205)
chr8 (21-80)||(44887717-44887776)
chr8 (19-81)||(3466282-3466344)
chr8 (19-81)||(11756775-11756837)
chr8 (19-80)||(37094132-37094193)
chr8 (19-81)||(38842161-38842224)
chr8 (19-81)||(43184779-43184841)
chr8 (19-83)||(23547065-23547129)
chr8 (21-83)||(8123652-8123714)
chr8 (19-80)||(20671256-20671317)
chr8 (19-80)||(40645609-40645670)
chr8 (21-65)||(5777556-5777600)
chr8 (19-50)||(8496886-8496917)
chr8 (26-80)||(44947018-44947071)
chr8 (19-80)||(4960151-4960212)
chr8 (19-80)||(15870175-15870236)
chr8 (19-80)||(44717296-44717357)
[»] scaffold0001 (1 HSPs)
scaffold0001 (19-80)||(183966-184027)
[»] scaffold0281 (1 HSPs)
scaffold0281 (19-80)||(13104-13165)
[»] scaffold0204 (1 HSPs)
scaffold0204 (19-78)||(23952-24011)
[»] scaffold0500 (1 HSPs)
scaffold0500 (21-80)||(680-739)
[»] scaffold0283 (1 HSPs)
scaffold0283 (26-80)||(2996-3049)
[»] scaffold0289 (1 HSPs)
scaffold0289 (19-80)||(9135-9196)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 79 - 251
Target Start/End: Original strand, 19061114 - 19061286
Alignment:
Q  79 taatatcatataatttctagttgactataataattcgtataatcttatcatacatgaacaagctcatgcatgaactgatgaacaagttgataattaacaa 178  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19061114 taatatcatataatttctagttgactataataattcgtatgatcttatcatacatgaacaaggtcatgcatgaactgatgaacaagttgataattaacaa 19061213  T
Q  179 cnnnnnnnttgaaagcaagttgaattgaaagtgtattttttatagacaagtcttcaagttgtatttgtctgtc 251  Q
    |       ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  19061214 caaaaaaattgaaagcaagttgaatggaaagtgtattttttatagacaagtcttcaagttgtatttgcctgtc 19061286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 36819677 - 36819613
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaata 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36819677 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaata 36819613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 38069112 - 38069049
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38069112 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaat 38069049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 16807149 - 16807210
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  16807149 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattacgggacggagggagta 16807210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 35693833 - 35693894
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  35693833 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcgcgacggagggagta 35693894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 30462224 - 30462285
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  30462224 agtaagttaagtcaaaattgcacattttcaaacagatcatttattgcgggacggagggagta 30462285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 25274020 - 25274081
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||    
T  25274020 agtaagttaggtcaaaattgcacattttcaaacagatcatttattgcaggacggatggagta 25274081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 37101029 - 37101090
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||    
T  37101029 agtaagttaggtcaaaattacacattttcaaataggtcatctattgcgggacggagggagta 37101090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 40231983 - 40231928
Alignment:
Q  25 ttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||    
T  40231983 ttaggtcaaaattgcacattttcaaacaggttatttattacgggacggagggagta 40231928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 35265823 - 35265881
Alignment:
Q  22 aagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||| ||||||| ||||| |||||||||| ||| ||||||||||||    
T  35265823 aagttaggtcaaaattgtacatttttaaacaagtcatttattacgggacggagggagta 35265881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 32972330 - 32972393
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaat 82  Q
    |||||| ||||||||| ||||| ||||||||| ||||||| |||||||| | ||||||||||||    
T  32972330 agtaagctaggtcaaacttgcaaattttcaaataggtcatctattgcgggagggagggagtaat 32972393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 38850763 - 38850708
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggag 74  Q
    ||||||||||||||||||| ||||||||||||  |||||| ||||| |||||||||    
T  38850763 agtaagttaggtcaaaattacacattttcaaatgggtcatctattgtggaacggag 38850708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 28016176 - 28016115
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    |||||||||| |||||||||||||||||||||  ||||| | ||||| |||||||||||||||    
T  28016176 agtaagttagatcaaaattgcacattttcaaatgggtca-tcattgcagaacggagggagtaa 28016115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 9173339 - 9173400
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||| ||| |||| |||  |||||| |||| ||||||||||||||||    
T  9173339 agtaagttaggtcaaaattacacgtttttaaattggtcatctattccggaacggagggagta 9173400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 18756660 - 18756599
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||| ||||||||||||||| |||||||||  |||||| |||| ||||||||| ||||||    
T  18756660 agtaagataggtcaaaattgcatattttcaaatgggtcatctattacggaacggatggagta 18756599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 47713435 - 47713479
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttatt 63  Q
    ||||||||||||||||||||||||||||||||  |||||| ||||    
T  47713435 agtaagttaggtcaaaattgcacattttcaaatgggtcatctatt 47713479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 32222611 - 32222548
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaat 82  Q
    ||||| |||| ||||||||||||||||| | |  |||||| |||| ||||||||||||||||||    
T  32222611 agtaaattagatcaaaattgcacattttgagatgggtcatctattacggaacggagggagtaat 32222548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 46242483 - 46242514
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaa 50  Q
    ||||||||||||||||||||||||||||||||    
T  46242483 agtaagttaggtcaaaattgcacattttcaaa 46242514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 40818700 - 40818754
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacgga 73  Q
    |||||||||| ||||||||||||||||||||| || |||| |||| ||| |||||    
T  40818700 agtaagttagatcaaaattgcacattttcaaatagatcatctattacgggacgga 40818754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 40665771 - 40665835
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaata 83  Q
    |||||| || ||||||||| || ||||||||| |  |||| |||||||||||||| |||||||||    
T  40665771 agtaagctaagtcaaaattacaaattttcaaataaatcatctattgcggaacggaaggagtaata 40665835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 24798553 - 24798617
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaata 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24798553 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagtaata 24798617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 2397831 - 2397770
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2397831 agtaaattaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagta 2397770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 2667332 - 2667393
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  2667332 agtaagttaggtcaaaattgcacattttcaaacagatcatttattgcgggacggagggagta 2667393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 17496325 - 17496386
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  17496325 agtaagttaggtcaaaattgcacattttcaaacagatcatttattgcgggacggagggagta 17496386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 2656677 - 2656738
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||    
T  2656677 agtaagttaggtcaaaattgcacattttcaaacagctcatttattgcgggacggatggagta 2656738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 29795512 - 29795451
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  29795512 agtaagttagatcaaaattgcacattttcaaacagatcatttattgcgggacggagggagta 29795451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 30699322 - 30699261
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  30699322 agtaagttaggtcaaaattacacatttttaaacagatcatttattgcggaacggagggagta 30699261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 32541484 - 32541545
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  32541484 agtaaattaggtcaaaattgcatattttcaaacaggtcatttattgcgggacggagggagta 32541545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 9022901 - 9022838
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaat 82  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  9022901 agtatgttaggtcaaaattgcatattttcaaacaggtcatttattgcaggacggagggagtaat 9022838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 24949596 - 24949530
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaatatc 85  Q
    |||||||||| |||||||||||||||||||||  |||||| |||||||| |||||||||||||||||    
T  24949596 agtaagttagatcaaaattgcacattttcaaatgggtcatctattgcgggacggagggagtaatatc 24949530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 995624 - 995555
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaatatcata 88  Q
    ||||| || |||||||||| |||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  995624 agtaaatttggtcaaaattacacattttcaaacatgtcatttattgcaggacggagggagtaatatcata 995555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 28483099 - 28483037
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaac-ggagggagta 80  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||| || ||||||||||    
T  28483099 agtaagttagatcaaaattgcacattttcaaacagatcatttattgcgggacgggagggagta 28483037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 6142514 - 6142575
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  || ||||| ||||||    
T  6142514 agtaagttaggtcaaaattgcacattttcaaacaggtcacttattaagggacggatggagta 6142575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 29515033 - 29515092
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggag 78  Q
    ||||||||||||||||||||||||||||||||||||| | |||||  || ||||||||||    
T  29515033 agtaagttaggtcaaaattgcacattttcaaacaggttacttattaagggacggagggag 29515092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 2141629 - 2141568
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||||||||||| |||||||||||||||||| |||||  || ||||| ||||||    
T  2141629 agtaagttaggtcaaaattgtacattttcaaacaggtcacttattaagggacggacggagta 2141568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 6188663 - 6188724
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||||||||||||||||||||||||| |||| |||||  || ||||| ||||||    
T  6188663 agtaagttaggtcaaaattgcacattttcaaacatgtcacttattaagggacggatggagta 6188724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 24825226 - 24825165
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||||||||||||||||||||||||| |||| |||||   | ||||||||||||    
T  24825226 agtaagttaggtcaaaattgcacattttcaaacatgtcacttattaaaggacggagggagta 24825165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 13358570 - 13358514
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagg 75  Q
    ||||||||||||||||||| |||||||||||| | ||||| ||||| ||||||||||    
T  13358570 agtaagttaggtcaaaattacacattttcaaataagtcatctattgtggaacggagg 13358514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 35117341 - 35117279
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    ||||||||| || |||||||||||||||||||  |||  ||||||||||||| ||||||||||    
T  35117341 agtaagttatgttaaaattgcacattttcaaatgggttctttattgcggaacagagggagtaa 35117279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 16661609 - 16661670
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||| ||||||||||||  | |||| |||||||| || |||||||||    
T  16661609 agtaagttaggtcaaaattacacattttcaaatggatcatctattgcgggactgagggagta 16661670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 10109418 - 10109467
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcgga 68  Q
    |||||||||||||||||||||||||||| |||  | |||| |||||||||    
T  10109418 agtaagttaggtcaaaattgcacatttttaaatggatcatctattgcgga 10109467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 31708954 - 31708893
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| ||| |||||||||||||||||| ||| || |||| |||||| | ||||||||||||    
T  31708954 agtaaattaagtcaaaattgcacatttttaaatagatcatctattgcaggacggagggagta 31708893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 9484657 - 9484593
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaata 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9484657 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagtaata 9484593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 29793376 - 29793440
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaata 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29793376 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagtaata 29793440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 42098625 - 42098687
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42098625 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagtaa 42098687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 49076424 - 49076485
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  49076424 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagta 49076485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 50673738 - 50673677
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50673738 agtaagttaagtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 50673677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 16434857 - 16434916
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16434857 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagta 16434916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 901086 - 901148
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  901086 agtaagttaggtcaaaattgcacattttcaaacagatcatttattgcgggacggagggagtaa 901148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 12948101 - 12948040
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  12948101 agtaagttaggtcaaaattgcacattttcaaacatgtcatttattgcgggacggagggagta 12948040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 29720456 - 29720395
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  29720456 agtaagttaggtcaaaattgcacattttcaaacagatcatttattgcgggacggagggagta 29720395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 34263702 - 34263763
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  34263702 agtaagttaggtcaaaattgcacatttttaaacaggtcatttattgcgggacggagggagta 34263763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 34555212 - 34555149
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaat 82  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||    
T  34555212 agtaagttaggtcaaaaatgcacattttcaaacaggtcacttattgcgggacggagggagtaat 34555149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 46866402 - 46866343
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  46866402 taagttaggtcaaaattgcacattttcaaacatgtcatttattgcgggacggagggagta 46866343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 29455706 - 29455767
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||    
T  29455706 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattacaggacggagggagta 29455767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 48927800 - 48927861
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  48927800 agtaagttaggtaaaaattgcacattttcaaacagatcatttattgcgggacggagggagta 48927861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 34669669 - 34669613
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagg 75  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  34669669 agtaagttaggtcaaaattgcacattttcaaacatgtcatttattgcgggacggagg 34669613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 53274995 - 53275055
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||    
T  53274995 taagttaggtcaaaattgcacattttcaaataggtcatttattgcgggacggaaggagtaa 53275055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 14751040 - 14751099
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggag 78  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||    
T  14751040 agtaagttaggtcaaaattgcacattttcaaacaggtcatctattgcgggagggagggag 14751099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 44781981 - 44782043
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    |||||||||| ||||||||||| ||||||||| ||||||| |||||||| |||||||||||||    
T  44781981 agtaagttagttcaaaattgcaaattttcaaataggtcatctattgcgggacggagggagtaa 44782043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 2643274 - 2643331
Alignment:
Q  26 taggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaata 83  Q
    ||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||    
T  2643274 taggtcaaaattgcaaattttcaaataggtcatctattgcgggacggagggagtaata 2643331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 29809406 - 29809341
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaatat 84  Q
    |||||| ||| ||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||    
T  29809406 agtaagctagatcaaaattgcaaattttcaaataggtcatctattgcgggacggagggagtaatat 29809341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 38833963 - 38834024
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||| || |||| ||||    
T  38833963 agtaagttaggtcaaaattacacatttttaaacaggtcatttattgcgggacagaggaagta 38834024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 38878486 - 38878532
Alignment:
Q  29 gtcaaaattgcacattttcaaacaggtcatttattgcggaacggagg 75  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||    
T  38878486 gtcaaaattgcacattttcaaacaggtcatttattacgggacggagg 38878532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 36179134 - 36179195
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||||| || |||||| |||||    
T  36179134 agtaaattaagtcaaaattgcacattttcaaacaggttatttattgtgggacggagagagta 36179195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 1334295 - 1334351
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggaggga 77  Q
    |||||||| |||||||| ||||||||||||  |||||| ||||||||||||||||||    
T  1334295 taagttagatcaaaattacacattttcaaatgggtcatctattgcggaacggaggga 1334351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 1778422 - 1778358
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaata 83  Q
    |||||| || |||||||||||| ||||||||| ||||||| |||||||| ||||||| |||||||    
T  1778422 agtaagctaagtcaaaattgcaaattttcaaataggtcatctattgcgggacggaggaagtaata 1778358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 4229186 - 4229247
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||| ||||||||||||||| ||||||||| | |||||||||||| | | ||||||||||    
T  4229186 agtaagctaggtcaaaattgcaaattttcaaataagtcatttattgcaggatggagggagta 4229247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 18013468 - 18013529
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| ||| ||||||||||||||||||||||  |||||| |||| ||| ||||||||||||    
T  18013468 agtaaattatgtcaaaattgcacattttcaaatgggtcatctattacgggacggagggagta 18013529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 52094094 - 52094155
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaat 82  Q
    |||||||| ||||||||||| |||||||||   ||||| |||||||||||||||| ||||||    
T  52094094 taagttagatcaaaattgcaaattttcaaatgagtcatctattgcggaacggaggaagtaat 52094155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 36364763 - 36364820
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||  |||||||| |||| ||||||||||| ||| ||||||||    
T  36364763 taagttaggtcaaaattgca--ttttcaaataggttatttattgcgggacgaagggagta 36364820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 53055627 - 53055683
Alignment:
Q  23 agttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagt 79  Q
    ||||||||||||||| ||||||||||||  ||||||||||||  | |||||||||||    
T  53055627 agttaggtcaaaattacacattttcaaattggtcatttattgtaggacggagggagt 53055683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 43370352 - 43370313
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcat 58  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  43370352 agtaagttatgtcaaaattgcacattttcaaataggtcat 43370313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 4945849 - 4945910
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||||||||||||| ||| ||||| | ||||| ||| | || ||||||||||||    
T  4945849 agtaagttaggtcaaaattgcaaattctcaaatacgtcatctatggtgggacggagggagta 4945910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 28958997 - 28959058
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||| ||||||||||||||| ||||| ||| || |||| |||||||  ||||||||||||    
T  28958997 agtaagctaggtcaaaattgcaaatttttaaatagatcatctattgcgagacggagggagta 28959058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 45299379 - 45299316
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45299379 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagtaat 45299316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 8251156 - 8251217
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8251156 agtaagttagatcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagta 8251217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 10100520 - 10100581
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  10100520 agtaagttaggtcaaaattgcacattttcaaacatgtcatttattgcgggacggagggagta 10100581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 52749340 - 52749281
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52749340 taagttaggtaaaaattgcacattttcaaacaggtcatttattgcgggacggagggagta 52749281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 10124170 - 10124108
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||    
T  10124170 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcgggatggatggagtaa 10124108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 5606398 - 5606459
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  5606398 agtaagttagatcaaaattgcactttttcaaataggtcatttattgcgggacggagggagta 5606459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 6017456 - 6017517
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  6017456 agtaagttagatcaaaattgcacattttcaaacagatcatttattgcgggacggaggaagta 6017517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 1821635 - 1821699
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaata 83  Q
    |||||||||||||||||||||||||||||||| ||| ||| |||||| | |||||||||||||||    
T  1821635 agtaagttaggtcaaaattgcacattttcaaataggccatctattgccggacggagggagtaata 1821699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 26543929 - 26543874
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggag 74  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  26543929 agtaagttaggtcaaaattgtacattttcaaacagatcatttattgcgggacggag 26543874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 7075337 - 7075398
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||||| | ||||||||||    
T  7075337 agtaagttagatcaaaattgcacgttttcaaacaagtcatttattgcgggatggagggagta 7075398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 41855728 - 41855789
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||| ||| ||||||||||||    
T  41855728 agtaagctaggtcaaaattgcaaattttcaaataggtcatttattacgggacggagggagta 41855789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 44240580 - 44240519
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||| ||||||||||||||| ||||| ||| |||||||||||||||| ||||||||||||    
T  44240580 agtaagctaggtcaaaattgcaaatttttaaataggtcatttattgcgggacggagggagta 44240519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 5945816 - 5945765
Alignment:
Q  29 gtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||||||||||||||| |||||||||||||| |||||| |||||    
T  5945816 gtcaaaattgcacattttcaaacatgtcatttattgcgggacggagagagta 5945765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 8048757 - 8048820
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaatat 84  Q
    |||| ||||||||||||||| ||||||||| ||||||| |||||| | ||||||||||||||||    
T  8048757 taagctaggtcaaaattgcaaattttcaaataggtcatctattgcaggacggagggagtaatat 8048820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 28490211 - 28490160
Alignment:
Q  29 gtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||| ||||||||| ||||||| |||||||| ||||||||||||    
T  28490211 gtcaaaattgcaaattttcaaataggtcatctattgcgggacggagggagta 28490160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 31932192 - 31932246
Alignment:
Q  26 taggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||| ||||||||| || |||| |||||||| ||||||||||||    
T  31932192 taggtcaaaattgcaaattttcaaatagatcatctattgcgggacggagggagta 31932246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 44741402 - 44741348
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagg 75  Q
    |||||||| |||||||||||||| |||||| | ||||||||||||||||| ||||    
T  44741402 taagttagatcaaaattgcacatattcaaatatgtcatttattgcggaacagagg 44741348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 48389127 - 48389081
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgc 65  Q
    |||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  48389127 agtaagctaggtcaaaattgcaaattttcaaataggtcatttattgc 48389081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 2126713 - 2126652
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| ||||||||||||| |||||||| ||| | ||||| |||||||||| ||||||||||    
T  2126713 agtaaattaggtcaaaattacacatttttaaataagtcatctattgcggaatggagggagta 2126652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 29253540 - 29253479
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||| ||||||||||||||| ||||||||| || |||| |||||||| ||||| ||||||    
T  29253540 agtaagctaggtcaaaattgcaaattttcaaatagatcatctattgcgggacggatggagta 29253479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 36035747 - 36035686
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| |||| |||||||| |||||||| |||||||||||||||||| ||| ||| ||||||    
T  36035747 agtaaattagatcaaaattacacatttttaaacaggtcatttattgcagaatggaaggagta 36035686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 41414264 - 41414203
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||| ||||||||||||||| ||||||||| |||| || |||||| | ||||||||||||    
T  41414264 agtaagctaggtcaaaattgcaaattttcaaataggtaatctattgcaggacggagggagta 41414203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 31651916 - 31651956
Alignment:
Q  27 aggtcaaaattgcacattttcaaacaggtcatttattgcgg 67  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  31651916 aggttaaaattgcacattttcaaataggtcatttattgcgg 31651956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 12685911 - 12685966
Alignment:
Q  25 ttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||| |||||||||||||||||||||| |||||| |||| ||| ||| ||||||||    
T  12685911 ttagatcaaaattgcacattttcaaacgggtcatctattacgggacgaagggagta 12685966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 44452256 - 44452197
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggag 78  Q
    ||||||||||||||||||| ||||||||||||  || ||| |||||||| || |||||||    
T  44452256 agtaagttaggtcaaaattacacattttcaaatgggacatctattgcgggacagagggag 44452197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 5437 - 5376
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5437 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagta 5376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 1098236 - 1098175
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1098236 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagta 1098175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 20040418 - 20040480
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  20040418 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattacgggacggagggagtaa 20040480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 1781148 - 1781209
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1781148 agtaacttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagta 1781209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 40316879 - 40316818
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40316879 agtaaattaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagta 40316818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 41410662 - 41410723
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41410662 agtaaattaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagta 41410723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 19344704 - 19344763
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  19344704 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggaaggagta 19344763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 1831412 - 1831351
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1831412 agtaaattatgtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagta 1831351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 14633068 - 14633007
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||    
T  14633068 agtaagttaggtcaaaattgcacattttcaaacagatcatttattgcaggacggagggagta 14633007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 31191180 - 31191241
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  31191180 agtaaattaggtcaaaattgcacattttcaaacatgtcatttattgcgggacggagggagta 31191241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 20022921 - 20022874
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcg 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20022921 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcg 20022874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 13548274 - 13548212
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  || |||||||||||||    
T  13548274 agtaagttaggtcaaaattgcacattttcaaacaggtcacttattaagggacggagggagtaa 13548212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 14057769 - 14057711
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggaggga 77  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||    
T  14057769 agtaagttaggtcaaaattgcatattttcaaacagatcatttattgcgggacggaggga 14057711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 14607566 - 14607618
Alignment:
Q  25 ttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggaggga 77  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  14607566 ttaggtcaaaattgcacattttcaaacatgtcatttattgcgggacggaggga 14607618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 30721690 - 30721750
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    |||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||    
T  30721690 taagttaggtcaaaattgcacattttcaaatatgtcatttattgcgggatggagggagtaa 30721750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 30211744 - 30211799
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggag 74  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||    
T  30211744 agtaagttagatcaaaattgcacatttttaaacaggtcatttattgcgggacggag 30211799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 27675601 - 27675540
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||| ||||||||||||||| ||||||||| | |||||||||||||| ||||||||||||    
T  27675601 agtaagctaggtcaaaattgcaaattttcaaataagtcatttattgcgggacggagggagta 27675540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 41263132 - 41263193
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||||||||||||||||||| |||||  |||||||||| || ||||||||||||    
T  41263132 agtaagttaggtcaaaattgcacatttttaaacatatcatttattgagggacggagggagta 41263193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 2799692 - 2799638
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacgga 73  Q
    ||||||||||||||||||||||||||||||||  |||||| |||| |||||||||    
T  2799692 agtaagttaggtcaaaattgcacattttcaaatgggtcatctattacggaacgga 2799638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 8627196 - 8627142
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacgga 73  Q
    |||||||||| ||||||||||||||||||||| ||||||| |||||||| |||||    
T  8627196 agtaagttagatcaaaattgcacattttcaaataggtcatctattgcgggacgga 8627142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 34347528 - 34347474
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacgga 73  Q
    ||||||||| ||||||||| |||||||||||| ||||||| ||||||||||||||    
T  34347528 agtaagttatgtcaaaattacacattttcaaataggtcatctattgcggaacgga 34347474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 33402594 - 33402655
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||| |||||||| |||||| |||| |||| ||| ||||||||||||    
T  33402594 agtaagttaggtcaaaattacacatttttaaacagatcatctattacgggacggagggagta 33402655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 9936897 - 9936955
Alignment:
Q  25 ttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaata 83  Q
    |||| ||||||||||||||||| ||| |  ||||||||||||| |||||||||||||||    
T  9936897 ttagatcaaaattgcacatttttaaatatatcatttattgcgggacggagggagtaata 9936955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 30788266 - 30788205
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||| ||||||||| ||||||||||||  |||||| |||| ||| ||||||||||||    
T  30788266 agtaagttatgtcaaaattacacattttcaaatgggtcatatattacgggacggagggagta 30788205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 32110675 - 32110736
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| |||| |||||||||||||||||||||  | | || |||||||||||||||||||||    
T  32110675 agtaaattagatcaaaattgcacattttcaaatggattatctattgcggaacggagggagta 32110736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 2805858 - 2805806
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacg 71  Q
    ||||| ||||||||||||||||||||||||||  |||||| |||| |||||||    
T  2805858 agtaaattaggtcaaaattgcacattttcaaatgggtcatctattacggaacg 2805806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 40080042 - 40079979
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaat 82  Q
    |||||||||||| ||||||| | ||||||||| ||||||| |||||  | ||||||||||||||    
T  40080042 agtaagttaggttaaaattgtaaattttcaaataggtcatctattgtaggacggagggagtaat 40079979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 10465298 - 10465360
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    |||||| ||||||||||||  | ||||||||| ||||||| |||||||| | |||||||||||    
T  10465298 agtaagataggtcaaaattataaattttcaaataggtcatctattgcgggagggagggagtaa 10465360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 41042840 - 41042888
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcgg 67  Q
    |||||| ||| ||||||||||| ||||||||| |||| |||||||||||    
T  41042840 agtaagctagatcaaaattgcaaattttcaaataggttatttattgcgg 41042888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 10384909 - 10384848
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10384909 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagta 10384848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 31152722 - 31152659
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaat 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  31152722 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgtgggacggagggagtaat 31152659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 55631879 - 55631938
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  55631879 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagta 55631938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 37667776 - 37667837
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37667776 agtaaattaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagta 37667837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 40411611 - 40411672
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  40411611 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattacgggacggagggagta 40411672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 46608274 - 46608209
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaatat 84  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||    
T  46608274 agtaagttaggtcaaaatttcacattttcaaacaggtcatttattgcgggacggaggaagtaatat 46608209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 39171017 - 39170963
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagg 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39171017 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagg 39170963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 48380534 - 48380472
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||    
T  48380534 agtaagttaggtcaaaaatgcacattttcaaacaggtcacttattgcgggacggagggagtaa 48380472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 3708314 - 3708253
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||    
T  3708314 agtaagttaggtcaaaattgcacattttcaaacagatcatttattgtgggacggagggagta 3708253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 43447226 - 43447165
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  43447226 agtaagttaggtcaaaattgcacattttcaaacagatcatttattacgggacggagggagta 43447165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 8525418 - 8525480
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  || |||||||||||||    
T  8525418 agtaagttaggtcaaaattgcatattttcaaacaggtcatttattatgggacggagggagtaa 8525480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 39332832 - 39332893
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||  ||||||||||||    
T  39332832 agtaagttagttcaaaattgcacattttcaaacagatcatttattgcgtgacggagggagta 39332893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 31657358 - 31657422
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaata 83  Q
    |||||| ||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||    
T  31657358 agtaagctaggtcaaaattgcaaatttttaaataggtcatttattgcgggacggagggagtaata 31657422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 6520496 - 6520433
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaat 82  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||    
T  6520496 agtaagctaggtcaaaattgcaaattttcaaataggtcatttattgcgggacggatggagtaat 6520433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 28914429 - 28914368
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||||||||||| | ||||| |||||| | ||||||||||||||||||||||||    
T  28914429 agtaagttaggtcaaaattgtaaattttgaaacagtttatttattgcggaacggagggagta 28914368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 43047448 - 43047387
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| | ||||| ||||    
T  43047448 agtaagttaggttaaaattgcacattttcaaacaagtcatttattgcgggatggaggaagta 43047387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 48336430 - 48336489
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggag 78  Q
    ||||||||||||||||||||||||||||||||   ||||| |||||||| ||||||||||    
T  48336430 agtaagttaggtcaaaattgcacattttcaaatgtgtcatctattgcgggacggagggag 48336489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 28899080 - 28899134
Alignment:
Q  26 taggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||| ||||||||| ||||||| |||||||| || |||||||||    
T  28899080 taggtcaaaattgcaaattttcaaataggtcatctattgcgggacagagggagta 28899134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 1377564 - 1377503
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||| ||||||||||||||| ||||||||| ||||| |||||||||| ||  ||||||||    
T  1377564 agtaagataggtcaaaattgcaaattttcaaataggtcgtttattgcgggacaaagggagta 1377503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 39376881 - 39376938
Alignment:
Q  26 taggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaata 83  Q
    ||||||||||||||| ||||||||  | ||||| |||||||| |||||||||||||||    
T  39376881 taggtcaaaattgcaaattttcaactaagtcatctattgcgggacggagggagtaata 39376938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 42185329 - 42185272
Alignment:
Q  25 ttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaat 82  Q
    |||||||||||||||| |||||||||  | |||| |||||||| ||||||||||||||    
T  42185329 ttaggtcaaaattgcaaattttcaaatggatcatctattgcgggacggagggagtaat 42185272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 33394138 - 33394074
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaata 83  Q
    |||||||||||||||||||||||||||| |||  |||||  ||||| || ||||||| |||||||    
T  33394138 agtaagttaggtcaaaattgcacatttttaaatgggtcacctattgtgggacggaggaagtaata 33394074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 1613220 - 1613275
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggag 74  Q
    ||||| ||||||||||||| |||||||||||| ||||||| |||| ||| ||||||    
T  1613220 agtaaattaggtcaaaattacacattttcaaataggtcatctattacgggacggag 1613275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 24334390 - 24334444
Alignment:
Q  26 taggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||| ||||||||| ||||||| |||||||| ||  ||||||||    
T  24334390 taggtcaaaattgcaaattttcaaataggtcatctattgcgggacaaagggagta 24334444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 44210199 - 44210149
Alignment:
Q  30 tcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||| | ||| ||| |||||||||||||||| ||||||||||||    
T  44210199 tcaaaattgcaaaattttaaataggtcatttattgcgggacggagggagta 44210149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 23605904 - 23605965
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||| ||||||||||||| | ||||||||| || ||||||||||||| | |||| |||||    
T  23605904 agtaagctaggtcaaaattgtaaattttcaaatagatcatttattgcgggatggagagagta 23605965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 7724613 - 7724672
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggag 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7724613 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggag 7724672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 12209050 - 12208988
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  12209050 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggaggaagtaa 12208988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 31603418 - 31603477
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggag 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  31603418 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgtgggacggagggag 31603477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 8373495 - 8373434
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||    
T  8373495 agtaagttaggtcaaaattgcacattttcaaacagatcatttattgcgggacagagggagta 8373434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 16127782 - 16127842
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagt 79  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||    
T  16127782 agtaagttaggtcaaaattacacattttcaaataggtcatttattgcgggacggagggagt 16127842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 40471795 - 40471736
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  40471795 taagttaagtcaaaattgcacattttcaaacaggttatttattgcgggacggagggagta 40471736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 16126084 - 16126146
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||| |||||| ||||||    
T  16126084 agtaagttaggtcaaaattgcacattttcaaatgggtcatttattgcgggacggagagagtaa 16126146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 16333541 - 16333479
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||| |||||| ||||||    
T  16333541 agtaagttaggtcaaaattgcacattttcaaatgggtcatttattgcgggacggagagagtaa 16333479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 8896332 - 8896271
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||  |||||| |||||||||| ||||||||||    
T  8896332 agtaagttaggtcaaaattgcacattttcaaatgggtcatctattgcggaatggagggagta 8896271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 41575623 - 41575562
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  41575623 agtaagctaggtcaaaattgcaaattttcaaataggtcatttattgcgggacggagggagta 41575562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 5096307 - 5096247
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    ||||||| |||||||||| |||||||||||||||| ||||||||||| |||||||||||||    
T  5096307 taagttatgtcaaaattgtacattttcaaacaggtaatttattgcgggacggagggagtaa 5096247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 38963856 - 38963792
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaata 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  || || ||||||||||||    
T  38963856 agtaagttaggtcaaaattgcacattttcaaacaggtcacttattaagggacagagggagtaata 38963792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 10333582 - 10333643
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaat 82  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| ||  ||||||||||||||    
T  10333582 taagttaggtcaaaattacacattttcaaacagatcatttattacgagacggagggagtaat 10333643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 11277612 - 11277564
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcgg 67  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  11277612 agtaagttatgtcaaaattgcacattttcaaataggtcatttattgcgg 11277564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 4137465 - 4137410
Alignment:
Q  25 ttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||| ||||||||| ||||||||||||| |||||||||||||| ||||||||||||    
T  4137465 ttagatcaaaattgtacattttcaaacatgtcatttattgcgggacggagggagta 4137410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 41436893 - 41436832
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||||||||||  |||||||||||||  ||||||||| ||| ||||||||||||    
T  41436893 agtaagttaggtcaaaattatacattttcaaacatttcatttattacgggacggagggagta 41436832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 37316929 - 37316876
Alignment:
Q  27 aggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||||| ||||||||| |||||||  ||||||| ||||||||||||    
T  37316929 aggtcaaaattgcaaattttcaaataggtcatcgattgcgggacggagggagta 37316876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 6730106 - 6730166
Alignment:
Q  20 gtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| ||||||||||||||| ||||||||  ||||||| |||||||  ||||||||||||    
T  6730106 gtaagctaggtcaaaattgcaaattttcaagtaggtcatctattgcgagacggagggagta 6730166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 37987938 - 37987982
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttatt 63  Q
    ||||| |||| |||||||||| |||||||||||||||||||||||    
T  37987938 agtaacttagatcaaaattgcgcattttcaaacaggtcatttatt 37987982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 18504531 - 18504468
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaatat 84  Q
    ||||||| ||||||||| |||||||||||| | ||||| |||| ||| ||||||| ||||||||    
T  18504531 taagttacgtcaaaattacacattttcaaataagtcatctattacgggacggaggaagtaatat 18504468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 20682715 - 20682653
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    |||||| | ||||||||||||| ||||| ||| ||||||  |||||||| |||||||||||||    
T  20682715 agtaagctgggtcaaaattgcaaatttttaaataggtcaactattgcgggacggagggagtaa 20682653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 2831768 - 2831707
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||| |||||||| |||  | |||||||| |||| |||| |||||||    
T  2831768 agtaagttaggtcaaaattacacatttttaaatggatcatttatcgcggtacggtgggagta 2831707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 22718545 - 22718606
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||| ||||||||||||||| ||||||||| || ||||||||| ||  |||||| |||||    
T  22718545 agtaagctaggtcaaaattgcaaattttcaaatagatcatttattacgcgacggagagagta 22718606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 44022329 - 44022297
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaac 51  Q
    |||||||||||| ||||||||||||||||||||    
T  44022329 agtaagttaggttaaaattgcacattttcaaac 44022297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 45036423 - 45036363
Alignment:
Q  20 gtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||| ||||||||| |||||||| |||  |||||| |||||| | ||||||||||||    
T  45036423 gtaagttaagtcaaaattacacatttttaaatgggtcatctattgcaggacggagggagta 45036363  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 25691597 - 25691659
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  25691597 agtaagttaggtcaaaattgcacattttcaaacatgtcatttattgcggaacggatggagtaa 25691659  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 30464493 - 30464431
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  30464493 agtaagttaggtcaaaattgcacattttcaaacatgtcatttattgcgggacggagggagtaa 30464431  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 23437819 - 23437874
Alignment:
Q  25 ttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23437819 ttaggtcaaaattgcacattttcaaacaggtcatttattgcgggacggagggagta 23437874  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 14378686 - 14378749
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaat 82  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||    
T  14378686 agtaagttaggtcaaaattgcacattttcaaacctatcatttattgcgggacggagggagtaat 14378749  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 761611 - 761549
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||    
T  761611 agtaaattaggtcaaaattacacattttcaaacaggtcatttattgcgggacagagggagtaa 761549  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 4327119 - 4327180
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||||    
T  4327119 agtaagttagatcaaaattgcacattttcaaacaagtcatttattgcgggacgcagggagta 4327180  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 28583303 - 28583364
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||    
T  28583303 agtaaattaggtcaaaattgcacattttcaaaaaggtcatctattgcgggacggagggagta 28583364  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 25009205 - 25009142
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaat 82  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||| || ||||||| ||||||    
T  25009205 agtaaattaggtcaaaattgcacattttcaaacagatcatttattgagggacggaggaagtaat 25009142  T

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Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 44887717 - 44887776
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| |||||||||||||||||||||||| || ||||||||||||| ||||||||||||    
T  44887717 taagtcaggtcaaaattgcacattttcaaatagatcatttattgcgggacggagggagta 44887776  T

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Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 3466344 - 3466282
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    ||||||||||||||||||||| ||||||||||  |||||| |||||||| |||||||||||||    
T  3466344 agtaagttaggtcaaaattgcgcattttcaaatgggtcatctattgcgggacggagggagtaa 3466282  T

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Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 11756837 - 11756775
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    |||||||||||||||||||||| ||||||||| | ||||| ||||||||||| ||||||||||    
T  11756837 agtaagttaggtcaaaattgcaaattttcaaataagtcatctattgcggaacagagggagtaa 11756775  T

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Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 37094193 - 37094132
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  37094193 agtaagctaggtcaaaattgcaaattttcaaataggtcatttattgcgggacggaggaagta 37094132  T

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Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 38842224 - 38842161
Alignment:
Q  19 agtaagttaggtcaaaattgcacatttt-caaacaggtcatttattgcggaacggagggagtaa 81  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||| ||| ||||||| |||||    
T  38842224 agtaagttaggtcaaaattacacatttttcaaacaggtcatttattacgggacggaggaagtaa 38842161  T

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Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 43184779 - 43184841
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaa 81  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||| | | |||||||||||    
T  43184779 agtaagttaggtcaaaataacacatttttaaacaggtcatttattgcaggatggagggagtaa 43184841  T

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Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 23547129 - 23547065
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaata 83  Q
    |||||||||| |||||||| |||| ||| ||||||||||||||||  || |||||||||||||||    
T  23547129 agtaagttagatcaaaattacacaattttaaacaggtcatttattatgggacggagggagtaata 23547065  T

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Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 8123714 - 8123652
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagtaata 83  Q
    ||||||||||||||||| |||||||| |||  | |||| |||||| |||||||||||||||||    
T  8123714 taagttaggtcaaaattacacatttttaaatggatcatctattgcagaacggagggagtaata 8123652  T

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Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 20671317 - 20671256
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||| ||||||||||||  | |||| |||||||  ||||||||||||    
T  20671317 agtaagttaggtcaaaattacacattttcaaattgatcatctattgcgcgacggagggagta 20671256  T

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Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 40645670 - 40645609
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||||||||||| | |||||||||  || ||| |||||||| ||||||||||||    
T  40645670 agtaagttaggtcaaaattgaaaattttcaaatgggccatctattgcgggacggagggagta 40645609  T

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Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 5777556 - 5777600
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgc 65  Q
    |||| ||| |||||||| |||||||||||||||||||||||||||    
T  5777556 taagatagatcaaaattacacattttcaaacaggtcatttattgc 5777600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 8496886 - 8496917
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaa 50  Q
    ||||||||||||||||||||||||||||||||    
T  8496886 agtaagttaggtcaaaattgcacattttcaaa 8496917  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 44947071 - 44947018
Alignment:
Q  26 taggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||| |||  |||||| |||||||| ||||||||||||    
T  44947071 taggtcaaaattgcacatttttaaatgggtcatctattgcgg-acggagggagta 44947018  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 4960212 - 4960151
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||| ||||||||||||||| ||||||||| || |||| |||| ||| ||||| ||||||    
T  4960212 agtaagctaggtcaaaattgcaaattttcaaatagatcatctattacgggacggaaggagta 4960151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 15870236 - 15870175
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||| |||| |||||||||  ||||||||||||||| ||||||| | | ||||||||||||    
T  15870236 agtaaattagatcaaaattgttcattttcaaacaggttatttattactggacggagggagta 15870175  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 44717357 - 44717296
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||| |||||||| ||||||||||||  | ||||  ||||||| ||||||||||||    
T  44717357 agtaagttagttcaaaattacacattttcaaatggatcatccattgcgggacggagggagta 44717296  T

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Target: scaffold0001 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 184027 - 183966
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||    
T  184027 agtaagttaggtcaaaattgcacattttcaaacaggttatttattgcgagacggagggagta 183966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 13165 - 13104
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||    
T  13165 agtaagctaggtcaaaattgcaaatttttaaacaggtcatttattgtgggacggagggagta 13104  T

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Target: scaffold0204 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 23952 - 24011
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggag 78  Q
    ||||||||||||||||||||||||||||||||   ||||| |||||||| ||||||||||    
T  23952 agtaagttaggtcaaaattgcacattttcaaatgtgtcatctattgcgggacggagggag 24011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 680 - 739
Alignment:
Q  21 taagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||||||||||||| |||||||||  |||||| ||||||||  |||||||||||    
T  680 taagttaggtcaaaattgcatattttcaaatgggtcatctattgcggggcggagggagta 739  T

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Target: scaffold0283 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 3049 - 2996
Alignment:
Q  26 taggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    ||||||||||||||||||||| |||  |||||| |||||||| ||||||||||||    
T  3049 taggtcaaaattgcacatttttaaatgggtcatctattgcgg-acggagggagta 2996  T

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Target: scaffold0289 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 9196 - 9135
Alignment:
Q  19 agtaagttaggtcaaaattgcacattttcaaacaggtcatttattgcggaacggagggagta 80  Q
    |||||||||| |||||||||||||||||||||  | |||| ||| || |||||||| |||||    
T  9196 agtaagttagatcaaaattgcacattttcaaatggatcatctatcgcagaacggagagagta 9135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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