View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12116_low_4 (Length: 243)
Name: NF12116_low_4
Description: NF12116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12116_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 53660725 - 53660497
Alignment:
| Q |
1 |
aaattcactagtgtagatgctctttgttgtggcaagtatgagatgagttagaaatttcacattgcttggaaaaatgcatgttcagccacatataagtgag |
100 |
Q |
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| T |
53660725 |
aaattcactagtgtagatgctctttgttgtggcaagtatgagatgagttagaaatttcacattgcttggaaaaatgcatgttcagccacatataagtgag |
53660626 |
T |
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| Q |
101 |
aggacacataattaaccctggtgcattaaggttttaggttacgatgtgaagacaactcacttgtgtggttactcctgtccagtgtggtgatcaaataagc |
200 |
Q |
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| T |
53660625 |
aggacacataattaaccccggtgcatcaaggttttaggttacgatgtgaagacaactcacttgcgtggttactcctgtccaatgtggtgatcaaataagc |
53660526 |
T |
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| Q |
201 |
tccaatcacgacccaacaacgtatcagtg |
229 |
Q |
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| T |
53660525 |
tccaatcacgacccaacaacgtatcagtg |
53660497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 29802533 - 29802573
Alignment:
| Q |
28 |
tgtggcaagtatgagatgagttagaaatttcacattgcttg |
68 |
Q |
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| T |
29802533 |
tgtggcaagtgtgagatgagttagaagtctcacattgcttg |
29802573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 28855902 - 28855854
Alignment:
| Q |
25 |
tgttgtggcaagtatgagatgagttagaaatttcacattgcttggaaaa |
73 |
Q |
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||||||||||||| |||| |||||||||| | | ||||||||||||||| |
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| T |
28855902 |
tgttgtggcaagtgtgaggtgagttagaagtctgacattgcttggaaaa |
28855854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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