View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12117_high_10 (Length: 263)

Name: NF12117_high_10

Description: NF12117

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF12117_high_10

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 159; E-Value: 9e-85

Query Start/End: Original strand, 105 - 263

Target Start/End: Original strand, 39401724 - 39401882

Alignment:

Q	105	cacttatatctttctaaaaattgtatatacacgtactgcaaaaccaacaagcatactgatttattgataatgtgctcacgtgctccttttgaaggttaca	204	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39401724	cacttatatctttctaaaaattgtatatacacgtactgcaaaaccaacaagcatactgatttattgataatgtgctcacgtgctccttttgaaggttaca	39401823	T

Q	205	tggagatgtctctatttatacccctcaacttgtttcttagtttcatgtcattttcattc	263	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39401824	tggagatgtctctatttatacccctcaacttgtttcttagtttcatgtcattttcattc	39401882	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2

Raw Score: 57; E-Value: 7e-24

Query Start/End: Original strand, 108 - 263

Target Start/End: Original strand, 40253033 - 40253188

Alignment:

Q	108	ttatatctttctaaaaattgtatatacacgtactgcaaaaccaacaagcatactgatttattgataat-gtgctcacgtgctccttttgaaggttacatg	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\| \| \| \|\|\| \|\| \|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \| \|
T	40253033	ttatatctttctaaatattgtatatacacgtactgcaaagccatcaagcaaactgatttctggtaaatattgatcacatgctccttatgaaggttatagg	40253132	T

Q	207	gagatgtctctatttatacccctcaacttgtttcttagtttcatgtcattttcattc	263	Q
		\|\|\|\|\|\|\| \| \|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|
T	40253133	gagatgtat-taagtgtactcctcaacttgtttcttagtttcatgtccttttaattc	40253188	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]