View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12117_low_1 (Length: 807)

Name: NF12117_low_1
Description: NF12117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12117_low_1
NF12117_low_1
[»] chr7 (15 HSPs)
chr7 (8-769)||(38321774-38322532)
chr7 (468-693)||(38156926-38157149)
chr7 (460-692)||(38149146-38149376)
chr7 (585-696)||(43028249-43028360)
chr7 (465-543)||(38172402-38172480)
chr7 (465-515)||(42797587-42797637)
chr7 (465-543)||(43028400-43028478)
chr7 (479-543)||(45999761-45999825)
chr7 (651-696)||(38172583-38172628)
chr7 (660-696)||(35072739-35072775)
chr7 (660-696)||(35099076-35099112)
chr7 (660-696)||(42797405-42797441)
chr7 (583-630)||(38187148-38187195)
chr7 (484-543)||(38285464-38285522)
chr7 (486-543)||(37884240-37884297)
[»] chr6 (2 HSPs)
chr6 (489-691)||(4163428-4163628)
chr6 (489-691)||(4225049-4225249)
[»] chr3 (1 HSPs)
chr3 (481-543)||(2222867-2222928)


Alignment Details
Target: chr7 (Bit Score: 683; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 8 - 769
Target Start/End: Complemental strand, 38322532 - 38321774
Alignment:
Q  8 ggagaagcagagatcatgcccttttttgcaatgcagaacgcgtctgacaaggaactacatggctgtaacagaannnnnnnataaaataaaaaggtaaaac 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  38322532 ggagcagcagagatcatgcccttttttgcaatgcagaacgcgtctgacaaggaactacatggctgtaacagagtttttttataaaataaaaaggtaaaac 38322433  T
Q  108 tatgaaaattcttgtgtcgagagaaacaactcgacttctctgggtgtatgggatacaatgaaaaatcaagagaaaactaataaggtaaatgacagaacat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38322432 tatgaaaattcttgtgtcgagagaaacaactcgacttctctgggtgtatgggatacaatgaaaaatcaagagaaaactaagaaggtaaatgacagaacat 38322333  T
Q  208 ttgaatgttagaagaagaagaagtgcaaaagacttccagtggccgaagttgcctcagtatgactatgacacagcaaatgtgttgcaataaaatattatag 307  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38322332 ttgaatgttagaagaagaag---tgcaaaagacttccagtggccgaagttgcctcagtacgactatgacacagcaaatgtgttgcaataaaatattatag 38322236  T
Q  308 gcttgataattcaaatttcaaaatgaataatatagtcctcataaaaatctgaaaaattactactgaggattttgtttaggcaacagttgaggtattaaac 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  38322235 gcttgataattcaaatttcaaaatgaataatatagtcctcataaaaatctgaaaaattactactgaggattttttttaggcaacagttgagatattaaac 38322136  T
Q  408 agcctcgttaaaatactagatgcaacatcttcaagggaggctcacccatatggaaagaataaacatcaaccagcaaacatgggttttgactgactcacct 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  38322135 agcctcgttaaaatactagatgcaacatcttcaagggaggctcacccatatggaaagaataaacatcaactggcaaacatgggttttgactgactcacct 38322036  T
Q  508 gtgaagggctcatgaccatagctaaattctcgatattacttattgtgcaattgcaccaaagggactgtgtagacatttctttctcttagctgtattccaa 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38322035 gtgaagggctcatgaccatagctaaattctcgatattacttattgtgcaattgcaccaaagggactgtgtagacatttctttctcttagctgtattccaa 38321936  T
Q  608 aaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccactatattcaaatgatgagagattcaatgcatcaattgcatcaaaat 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  38321935 aaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccattatattcaaaggatgagagattcaatgcatcaattgcatcaaaat 38321836  T
Q  708 tgagttttcggaataaaacagcgtaccgcagaactgccgctggaatatacacagcagttagc 769  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38321835 tgagttttcggaataaaacagcgtaccgcagaactgccgctggaatatacacggcagttagc 38321774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 468 - 693
Target Start/End: Original strand, 38156926 - 38157149
Alignment:
Q  468 aaacatcaaccagcaaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat-tacttattgtgcaattgcaccaa 566  Q
    |||||||||| ||||||| ||| |||||| |||||||||||||||| |||||| | ||||| ||||||||| |||| || | ||  |||||||| |||||    
T  38156926 aaacatcaacaagcaaacttggtttttgagtgactcacctgtgaagtgctcataatcatagataaattctcaatatgtagtaatcttgcaattggaccaa 38157025  T
Q  567 agggactgtgtagacatttctttctcttagctgtattccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccactata 666  Q
    |||||   ||  ||  ||| | ||| ||||||| ||||||||||| |||||||||| |||||||  |||||| |||  | | ||| || | |||||| ||    
T  38157026 aggga---tgctgatttttttctcttttagctgcattccaaaaaagcttcaataacattggagccttaacattaaacccaaccgtcgtatgaccactgta 38157122  T
Q  667 ttcaaatgatgagagattcaatgcatc 693  Q
    |||||||||||||||||||||||||||    
T  38157123 ttcaaatgatgagagattcaatgcatc 38157149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 460 - 692
Target Start/End: Original strand, 38149146 - 38149376
Alignment:
Q  460 gaaagaataaacatcaaccagcaaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat-tacttattgtgcaat 558  Q
    |||| |||||||||||||||| |||| ||| ||||||  ||||||||||||||| ||| |||| ||||| |||||||| ||||| |  | ||   |||||    
T  38149146 gaaacaataaacatcaaccagaaaacgtggtttttgagcgactcacctgtgaagtgcttatgatcatagataaattctggatatgttgtaatctggcaat 38149245  T
Q  559 tgcaccaaagggactgtgtagacatttctttctcttagctgtattccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtca 658  Q
    || |||||| |||   ||| ||  ||||| ||| ||||| |  ||||| |||||||| |||||  |||||||  |||||||||| ||| ||   |||| |    
T  38149246 tggaccaaaagga---tgtggatttttctctcttttagccgcgttccagaaaacctttaataatattggagcattaacatcaaattccgtcagggtgtga 38149342  T
Q  659 ccactatattcaaatgatgagagattcaatgcat 692  Q
    |||||||||||||| |||| ||||||||||||||    
T  38149343 ccactatattcaaaggatgtgagattcaatgcat 38149376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 585 - 696
Target Start/End: Complemental strand, 43028360 - 43028249
Alignment:
Q  585 tctttctcttagctgtattccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccactatattcaaatgatgagagatt 684  Q
    ||||||||  |||||||||||| |||||||||||||| ||||| || |||| |  ||    | |||| |||| | ||||||||||||| |||||||||||    
T  43028360 tctttctcagagctgtattccagaaaaccttcaataatcttggggccgtaaaagaaattatcctcgtggtgtaagcactatattcaaaggatgagagatt 43028261  T
Q  685 caatgcatcaat 696  Q
    ||||||||||||    
T  43028260 caatgcatcaat 43028249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 543
Target Start/End: Original strand, 38172402 - 38172480
Alignment:
Q  465 aataaacatcaaccagcaaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 543  Q
    |||||||||||| || |||||||| ||||| ||| |||||||||||||| |||||||| ||||| ||| ||||| ||||    
T  38172402 aataaacatcaagcaacaaacatgagttttaacttactcacctgtgaagtgctcatgatcatagttaagttctcaatat 38172480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 515
Target Start/End: Complemental strand, 42797637 - 42797587
Alignment:
Q  465 aataaacatcaaccagcaaacatgggttttgactgactcacctgtgaaggg 515  Q
    ||||||||||||| |||||||||||||||||| ||||||||| ||||||||    
T  42797637 aataaacatcaactagcaaacatgggttttgagtgactcaccagtgaaggg 42797587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 543
Target Start/End: Complemental strand, 43028478 - 43028400
Alignment:
Q  465 aataaacatcaaccagcaaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 543  Q
    |||||||| |||| |||||||| ||||||||| |||||||||||||||| ||| |||  || |||||||||||| ||||    
T  43028478 aataaacaccaactagcaaacacgggttttgagtgactcacctgtgaagtgctgatgttcacagctaaattctcaatat 43028400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 479 - 543
Target Start/End: Original strand, 45999761 - 45999825
Alignment:
Q  479 agcaaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 543  Q
    ||||||||||| ||| |||  |||||||||||||||||| |||| ||||||||||||||| ||||    
T  45999761 agcaaacatggatttagacaaactcacctgtgaagggctgatgatcatagctaaattctcaatat 45999825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 651 - 696
Target Start/End: Original strand, 38172583 - 38172628
Alignment:
Q  651 tagtgtcaccactatattcaaatgatgagagattcaatgcatcaat 696  Q
    |||||| ||||||||||||||| ||||||||||| |||||||||||    
T  38172583 tagtgtaaccactatattcaaaggatgagagatttaatgcatcaat 38172628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 660 - 696
Target Start/End: Original strand, 35072739 - 35072775
Alignment:
Q  660 cactatattcaaatgatgagagattcaatgcatcaat 696  Q
    ||||||||||||| |||||||||||||||||||||||    
T  35072739 cactatattcaaaggatgagagattcaatgcatcaat 35072775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 660 - 696
Target Start/End: Original strand, 35099076 - 35099112
Alignment:
Q  660 cactatattcaaatgatgagagattcaatgcatcaat 696  Q
    ||||||||||||| |||||||||||||||||||||||    
T  35099076 cactatattcaaaggatgagagattcaatgcatcaat 35099112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 660 - 696
Target Start/End: Complemental strand, 42797441 - 42797405
Alignment:
Q  660 cactatattcaaatgatgagagattcaatgcatcaat 696  Q
    ||||||||||||| |||||||||||||||||||||||    
T  42797441 cactatattcaaaggatgagagattcaatgcatcaat 42797405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 630
Target Start/End: Original strand, 38187148 - 38187195
Alignment:
Q  583 tttctttctcttagctgtattccaaaaaaccttcaataaccttggagc 630  Q
    ||||| ||| ||||||| ||||||||||||||||||||| ||||||||    
T  38187148 tttctctctattagctgcattccaaaaaaccttcaataaacttggagc 38187195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 543
Target Start/End: Original strand, 38285464 - 38285522
Alignment:
Q  484 acatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 543  Q
    ||||||||||||||| ||||||||||||| || |||||  ||||||||||||||| ||||    
T  38285464 acatgggttttgact-actcacctgtgaatgggtcatggtcatagctaaattctcaatat 38285522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 543
Target Start/End: Complemental strand, 37884297 - 37884240
Alignment:
Q  486 atgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 543  Q
    |||| |||||||  |||||||| |||||||||||||||||| |||||| |||| ||||    
T  37884297 atggattttgaccaactcacctatgaagggctcatgaccattgctaaagtctcaatat 37884240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 489 - 691
Target Start/End: Original strand, 4163428 - 4163628
Alignment:
Q  489 ggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatattac-ttattgtgcaattgcaccaaagggactgtgtagacatttct 587  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||  | || || | ||  || ||||||||||||| ||   ||| || || |||    
T  4163428 ggttttgactgactcacctgtgaaggcatcatgatcatagctaaattctgaacatgacgtgatcttggaattgcaccaaagagatgatgtggatatctct 4163527  T
Q  588 ttctcttagctgtattccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccactatattcaaatgatgagagattcaa 687  Q
     |  ||||| || ||||||||||||||||||||||||||||||  |||||| ||  ||   | | ||||  |||||||||||||| ||||||||||||||    
T  4163528 cttccttagttgcattccaaaaaaccttcaataaccttggagctttaacatgaagttc---ccttgtgtagccactatattcaaaggatgagagattcaa 4163624  T
Q  688 tgca 691  Q
    ||||    
T  4163625 tgca 4163628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 489 - 691
Target Start/End: Original strand, 4225049 - 4225249
Alignment:
Q  489 ggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatattac-ttattgtgcaattgcaccaaagggactgtgtagacatttct 587  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||  | || || | ||  || ||||||||||||| ||   ||| || || |||    
T  4225049 ggttttgactgactcacctgtgaaggcatcatgatcatagctaaattctgaacatgacgtgatcttggaattgcaccaaagagatgatgtggatatctct 4225148  T
Q  588 ttctcttagctgtattccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccactatattcaaatgatgagagattcaa 687  Q
     |  ||||| || ||||||||||||||||||||||||||||||  |||||| ||  ||   | | ||||  |||||||||||||| ||||||||||||||    
T  4225149 cttccttagttgcattccaaaaaaccttcaataaccttggagctttaacatgaagttc---ccttgtgtagccactatattcaaaggatgagagattcaa 4225245  T
Q  688 tgca 691  Q
    ||||    
T  4225246 tgca 4225249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 481 - 543
Target Start/End: Original strand, 2222867 - 2222928
Alignment:
Q  481 caaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 543  Q
    |||||||| ||||||||| ||||||||||||| |||| |||  ||||||||||||||| ||||    
T  2222867 caaacatgagttttgact-actcacctgtgaatggctaatggtcatagctaaattctcaatat 2222928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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