View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12117_low_12 (Length: 249)
Name: NF12117_low_12
Description: NF12117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12117_low_12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 40958803 - 40959040
Alignment:
| Q |
12 |
acagacaaaagctacgacagttagcatttaatctcaaggttgggagttacctttttaatattgatcgttaaccttaaatgtttatgagcaatgtccttga |
111 |
Q |
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| T |
40958803 |
acagacaaaagctacgacagttagcatttaatctcaaggttgggagttacctttttaatatggatcgttaaccttaaatgtttatgagcaatgtccttga |
40958902 |
T |
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| Q |
112 |
aactttagagataaaaaatcacttgccactgctacattttattttgtataaggtgggacagtgggacttcttttttcttgtagttgaatacattttgtat |
211 |
Q |
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| T |
40958903 |
aactttagagataaaaaatcacttgccactgctacattttattttgtataaggtgggacagtgggacttcttttttcttgtagttgaatacattttgtat |
40959002 |
T |
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| Q |
212 |
tatattacttattatttttaacgaccatgatatcaaat |
249 |
Q |
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| T |
40959003 |
tatattacttattatttttaacgaccaggatatcaaat |
40959040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 40945818 - 40946024
Alignment:
| Q |
17 |
caaaagctacgacagttagcatttaatctcaaggttgggagttacctttttaatattgatcgttaaccttaaatgtttatgagcaatgtccttgaaactt |
116 |
Q |
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| T |
40945818 |
caaaagttacgacagctagtctttaatctcaaggttggaagttac-ttttcaatatggattattaaccttaaatgtttttcagc---gtctttgaaactt |
40945913 |
T |
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| Q |
117 |
tagagataaaaaatcacttgccactgctacattttattttgtataaggtgggacagtgggacttcttttttcttgtagttgaata--cattttgtattat |
214 |
Q |
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| T |
40945914 |
aagagatgaataatcacttgtcaccacgacatatgattttggataaggtgggacagtgggact--ttttttgttgtagttgaataggttttttttattat |
40946011 |
T |
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| Q |
215 |
attacttattatt |
227 |
Q |
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| T |
40946012 |
attacttattatt |
40946024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 22507713 - 22507655
Alignment:
| Q |
35 |
gcatttaatctcaaggttgggagttacctttttaatattgatcgttaaccttaaatgtt |
93 |
Q |
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| T |
22507713 |
gcatttaatcttaaggttgtgagttacttttttaatatgaattattaaccttaaatgtt |
22507655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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