View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12117_low_2 (Length: 545)
Name: NF12117_low_2
Description: NF12117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12117_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 15 - 531
Target Start/End: Original strand, 1906092 - 1906603
Alignment:
| Q |
15 |
agaaacgcgacacatgactctaaccaccgagtttttcgactttcctccattgtgaaacttatttgctttctaacagcaatacacaatagaaactaatact |
114 |
Q |
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| T |
1906092 |
agaaacgcgacacatgactctaaccaccgagtttttcgactttcctccattgtgaaacttatttgctttctaacagcaatacacaatagaaactaatact |
1906191 |
T |
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| Q |
115 |
aggtggaaacatgcattacatcgtaacataacataacataggacctaaagggcaatgaattgcaaatgctctatactatgctttataatatattcctact |
214 |
Q |
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| T |
1906192 |
gggtggaaacatgcattacatc-----ataacataacataggacctaaagggcaatgaattgcaaatgctctatactatgctttataatatattcctact |
1906286 |
T |
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| Q |
215 |
cactaatgaagaggtcttgagtccaaaattccccttcaaaatctaccactggaattggaatggaagaaacaactcagttgactgctaccactgcattagg |
314 |
Q |
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| T |
1906287 |
tactaatgaagaggtcttgagtccaaaattccccttcaaaatctaccactggaattgtaatggaagaaacaactcagttgactgctaccactgcattagg |
1906386 |
T |
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| Q |
315 |
agctcctgaaaagctcatgttagattcacttgcttgtgtatggtgatatgttggattgaaacctgaccacttcatttgcatgaaactgctcttcctccaa |
414 |
Q |
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| T |
1906387 |
agctcctgaaaagctcatgttagattcacttgcttgtgtatggtgatatgttggattgaaacctgaccacttcatttgcatgaaactgctcttcctccaa |
1906486 |
T |
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| Q |
415 |
ggagccagatacattttcttctccttcattgatttctttgcagcatcacacacaagtcgaacaatcgcggttaagtactctggcttcccgacataaaatt |
514 |
Q |
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| T |
1906487 |
ggagccagatacattttcttctccttcattgatttctttgcagcatcacacacaagtcgaacaatcgcggttaagtactctggcttcccgacataaaatt |
1906586 |
T |
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| Q |
515 |
caggcaaacaagacaca |
531 |
Q |
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| T |
1906587 |
caggcaaacaagacaca |
1906603 |
T |
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