View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12117_low_3 (Length: 444)

Name: NF12117_low_3
Description: NF12117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12117_low_3
NF12117_low_3
[»] chr3 (9 HSPs)
chr3 (229-375)||(5565257-5565403)
chr3 (87-220)||(5565170-5565302)
chr3 (187-303)||(31896518-31896633)
chr3 (105-185)||(14175288-14175364)
chr3 (187-303)||(31945875-31945990)
chr3 (268-321)||(13539565-13539618)
chr3 (187-303)||(31912227-31912342)
chr3 (112-180)||(13539487-13539552)
chr3 (187-303)||(31688234-31688349)
[»] chr8 (1 HSPs)
chr8 (49-140)||(43618606-43618697)
[»] chr7 (1 HSPs)
chr7 (97-144)||(7854246-7854293)
[»] scaffold0007 (1 HSPs)
scaffold0007 (120-198)||(257658-257735)
[»] scaffold0003 (2 HSPs)
scaffold0003 (204-303)||(42747-42845)
scaffold0003 (187-303)||(36571-36686)
[»] chr6 (1 HSPs)
chr6 (204-303)||(27444516-27444614)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 229 - 375
Target Start/End: Original strand, 5565257 - 5565403
Alignment:
Q  229 gagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggtcgctgtcagaagcttcttttattttgcaacgttaattgttat 328  Q
    |||||| |||||||| ||||| ||| |||| ||||||||||||||| || ||||  ||| ||||||||||||||||||||||||||| ||||||||||||    
T  5565257 gagttgcaccaccgtcgttgaccactgcgtcggaattcgctcttcaccgtgtcgatgtcactgtcagaagcttcttttattttgcaaggttaattgttat 5565356  T
Q  329 tttcagtttttgtattcctcatttctaatactgaatcattcattgat 375  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||    
T  5565357 tttctgcttttgtattcctcatttctaatactgaatcattcattgat 5565403  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 5565170 - 5565302
Alignment:
Q  87 ttttttagccttcttccactaaagtaaaagcatcatcgtcttcatctcttcatcctctccgaaaacccacttgctttccaccacgccggagttgcaccac 186  Q
    ||||| |||||||| ||||||||||||||||||||| ||||| |||||||| |||||| | |||||||||||| ||||||||||||||||||||||||||    
T  5565170 tttttcagccttctcccactaaagtaaaagcatcatagtcttaatctcttcgtcctctac-aaaacccacttgttttccaccacgccggagttgcaccac 5565268  T
Q  187 catcgttgaccatcgcatcggaattcgctcttca 220  Q
    | ||||||||||  || |||||||||||||||||    
T  5565269 cgtcgttgaccactgcgtcggaattcgctcttca 5565302  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 303
Target Start/End: Complemental strand, 31896633 - 31896518
Alignment:
Q  187 catcgttgaccatcgcatcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 286  Q
    |||||||||||| ||| |||||||  |||||| | ||| || |||||| |||||| ||||| |||||||||| || |||||||||||| |||||| | ||    
T  31896633 catcgttgaccaccgcgtcggaatatgctcttaaccgcgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgtcagtgt 31896535  T
Q  287 cgctgtcagaagcttct 303  Q
    |||||| ||||||||||    
T  31896534 cgctgttagaagcttct 31896518  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 14175364 - 14175288
Alignment:
Q  105 ctaaagtaaaagcatcatcgtcttcatctcttcatcctctccgaaaacccacttgctttccaccacgccggagttgcacca 185  Q
    ||||||||||||||||   |||||||| ||||| |||||| | |||||||| |||||||||||||||||||||||||||||    
T  14175364 ctaaagtaaaagcatc---gtcttcatttcttcgtcctctac-aaaacccatttgctttccaccacgccggagttgcacca 14175288  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 303
Target Start/End: Complemental strand, 31945990 - 31945875
Alignment:
Q  187 catcgttgaccatcgcatcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 286  Q
    |||||||||||| ||| |||||||  |||||| | ||| || |||||| |||||| ||||| |||||||||| || |||||||||||| |||| | | ||    
T  31945990 catcgttgaccaccgcgtcggaatatgctcttaaccgcgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgccagtgt 31945892  T
Q  287 cgctgtcagaagcttct 303  Q
    |||||| ||||||||||    
T  31945891 cgctgttagaagcttct 31945875  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 13539565 - 13539618
Alignment:
Q  268 ctcttcaacgcgtcggggtcgctgtcagaagcttcttttattttgcaacgttaa 321  Q
    ||||||| ||||||||| | |||||||||||||||||||||||||||| |||||    
T  13539565 ctcttcatcgcgtcgggtttgctgtcagaagcttcttttattttgcaaggttaa 13539618  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 303
Target Start/End: Complemental strand, 31912342 - 31912227
Alignment:
Q  187 catcgttgaccatcgcatcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 286  Q
    |||||||||||| ||| |||||||  |||||| | ||  || |||||| |||||| ||||| |||||||||| || |||||||||||| |||| | | ||    
T  31912342 catcgttgaccaccgcgtcggaatatgctcttaaccgtgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgccagtgt 31912244  T
Q  287 cgctgtcagaagcttct 303  Q
    |||||| ||||||||||    
T  31912243 cgctgttagaagcttct 31912227  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 13539487 - 13539552
Alignment:
Q  112 aaaagcatcatcgtcttcatctcttcatcctctccgaaaacccacttgctttccaccacgccggagttg 180  Q
    ||||||||||| |||||||||||||||||||||  | |||||||| |||||| ||||| ||||||||||    
T  13539487 aaaagcatcattgtcttcatctcttcatcctct--gcaaacccacatgcttt-caccatgccggagttg 13539552  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 303
Target Start/End: Original strand, 31688234 - 31688349
Alignment:
Q  187 catcgttgaccatcgcatcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 286  Q
    |||||||||||| ||| || ||||  |||||| | |||  | |||||| |||||| ||||| ||||||||||  || ||||||||||| |||| | | ||    
T  31688234 catcgttgaccaccgcgtcagaatatgctcttaaccgcgtcggagttgcaccacccttgttaatcaccgcgtcaga-ttcgctcttcatcgcgccagtgt 31688332  T
Q  287 cgctgtcagaagcttct 303  Q
    |||||| ||||||||||    
T  31688333 cgctgttagaagcttct 31688349  T

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Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 43618697 - 43618606
Alignment:
Q  49 acacgaaaacccttcttcttattccctcatttcgttaattttttagccttcttccactaaagtaaaagcatcatcgtcttcatctcttcatc 140  Q
    |||| ||||||||||||||||| |||||||||  || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43618697 acacaaaaacccttcttcttatgccctcatttgcttcattttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatc 43618606  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 7854246 - 7854293
Alignment:
Q  97 ttcttccactaaagtaaaagcatcatcgtcttcatctcttcatcctct 144  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  7854246 ttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctct 7854293  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 257658 - 257735
Alignment:
Q  120 catcgtcttcatctcttcatcctctccgaaaacccacttgctttccaccacgccggagttgcaccaccatcgttgacca 198  Q
    |||||||||||| ||||| |||||| | |||||||| ||||||||| |||||||||||||  |||||  ||||||||||    
T  257658 catcgtcttcatttcttcgtcctctac-aaaacccatttgctttcctccacgccggagttaaaccactgtcgttgacca 257735  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 303
Target Start/End: Complemental strand, 42845 - 42747
Alignment:
Q  204 tcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggtcgctgtcagaagcttct 303  Q
    |||||||  |||||| | ||| || ||||||||||||||||||| |||||||||| || |||||||||| | |||  | | |||||||| ||||||||||    
T  42845 tcggaatatgctcttaaccgcgccggagttgaaccaccgttgttaatcaccgcgtcgg-attcgctctttatcgcaccagtgtcgctgttagaagcttct 42747  T

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Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 303
Target Start/End: Complemental strand, 36686 - 36571
Alignment:
Q  187 catcgttgaccatcgcatcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 286  Q
    ||||||||| || ||| | |||||  |||||| | ||| || |||||| | |||||||||| ||||||| || ||| ||||||||||| |||| | | ||    
T  36686 catcgttgatcaccgcgttggaatatgctcttaaccgcgccggagttgcatcaccgttgttaatcaccgtgtcgga-ttcgctcttcatcgcgccagtgt 36588  T
Q  287 cgctgtcagaagcttct 303  Q
    |||||| ||||||||||    
T  36587 cgctgttagaagcttct 36571  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 303
Target Start/End: Original strand, 27444516 - 27444614
Alignment:
Q  204 tcggaattcgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggtcgctgtcagaagcttct 303  Q
    |||||||  |||||| | ||| || ||||||||||||||||||| |||||||||| || |||||||||| | |||  | | |||||||| ||||||||||    
T  27444516 tcggaatatgctcttaaccgcgccggagttgaaccaccgttgttaatcaccgcgtcgg-attcgctctttatcgcaccagtgtcgctgttagaagcttct 27444614  T

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