View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12118_high_4 (Length: 251)
Name: NF12118_high_4
Description: NF12118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12118_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 27152724 - 27152934
Alignment:
| Q |
18 |
cagaacgcatttggttgagcccaccatttgtatgaactaaaagatatccacgtgactcaacaggagctgaatgaacatgtattaatctgagtaagtacca |
117 |
Q |
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| T |
27152724 |
cagaacgcatttggttgagcccaccatttgtatgaactaaaagatatccacgtgactcagcaggagctgaatgaacatgtattaatctgagtaagtacca |
27152823 |
T |
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| Q |
118 |
aactaattcatacttgtaacttgtaacttgtaatgaaagtctatgtttaagtttcttaccggtgtaattaggagtaggctttgtacaaggaagaaaccca |
217 |
Q |
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| T |
27152824 |
aactaattcat-------acttgtaacttgtaatgaaagtctatgtttaagtttcttaccggtgtaattaggagtaggctttgtacaaggaagaaaccca |
27152916 |
T |
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| Q |
218 |
cgatttgatggaggcttc |
235 |
Q |
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| T |
27152917 |
cgatttgatggaggcttc |
27152934 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 45597094 - 45597152
Alignment:
| Q |
166 |
aagtttcttaccggtgtaattaggagtaggctttgtacaaggaagaaacccacgatttg |
224 |
Q |
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| T |
45597094 |
aagtttcttactagtgtagttaggagtaggctttgtacagggtagaaacccatgatttg |
45597152 |
T |
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