View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12118_low_1 (Length: 669)
Name: NF12118_low_1
Description: NF12118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12118_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 120 - 650
Target Start/End: Original strand, 42417334 - 42417864
Alignment:
| Q |
120 |
caagatattccagctaattttcactgcttttgtttacagctagcacatcatgtcatatatatgatacttttgtcactaactagaatcaatccaattcctt |
219 |
Q |
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| T |
42417334 |
caagatattccagctaattttcactgcttttgtttacagctagcacatcatgtcatatatatgatacttttgtcactaactagaatcaatccaattcctt |
42417433 |
T |
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| Q |
220 |
gcttaagagatatttcaaaatggtccattagtaccggtgtatcacttaaagtggcacatcaccactttaactgaaactaattgagtgattaacttgatca |
319 |
Q |
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| T |
42417434 |
gcttaagagatatttcaaaatggtccattagtaccggtgtatcacttaaagtggcacatcaccactttaactgaaactaattgagtgattaacttgatca |
42417533 |
T |
|
| Q |
320 |
acgttttgattagtcatagactattttggaatattgataaaataggtgaccaagttgataagagtactaaatttgaagtacccaattgagtgttttgtat |
419 |
Q |
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| T |
42417534 |
acgttttgattagtcatagactattttggaatattgataaaataggtgaacaagttgataagagtactaaatttgaagtacccaattgagtgttttgtat |
42417633 |
T |
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| Q |
420 |
ttacacacaattatttgttcaagtgcctaatttgtaaggcgcaacgtctcttgatgagcaagggcttaatggtgaaagtcaattagattcaattccaggt |
519 |
Q |
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| T |
42417634 |
ttacacacaattatttgttcaagtgtctaatttgtaaggcgcaacgtctcttgatgagcaagggcttaatggtgaaagtcaattagattcaattccaggt |
42417733 |
T |
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| Q |
520 |
gaataatgtcaaggaagctatagctaataattgtaatttggaatttctcagacatgtaggttagagccttagaggtcatgtaatttgaaaggtcacaggc |
619 |
Q |
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| T |
42417734 |
gaataatgtcaaggaagctatagctaataattgtaatttggaatttctcagacatgtaggttagagccttagaggtcatgtaatttgaaaggtcgcaggc |
42417833 |
T |
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| Q |
620 |
tcttcgatttgaaaggtcgcaggctcttatc |
650 |
Q |
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| T |
42417834 |
tcttcgatttgaaaggtcgcaggctcttatc |
42417864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 19577544 - 19577591
Alignment:
| Q |
14 |
tgtgataattgagtgaagaaaaaaggggttgagaattgaatgaatgaa |
61 |
Q |
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| T |
19577544 |
tgtgataattgagtgaagaaagaaggggttgagaattgaatgaatgaa |
19577591 |
T |
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