View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12118_low_10 (Length: 220)
Name: NF12118_low_10
Description: NF12118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12118_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 40836309 - 40836515
Alignment:
| Q |
1 |
gagacaaaatcactcagggtggtgggaatggtgtagtctcagaaatctcaaatcatcatcttttacattttatcaaagagacgctaaatcttatggatcg |
100 |
Q |
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| T |
40836309 |
gagacaaaatcactcacgctggtgggaatggtgaagtttcagaaatcttaaatcatgatattttacatcttatcaaagagacgttaaatcttatggatcg |
40836408 |
T |
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| Q |
101 |
ttatcattgaaaatataagatcaaacatgtttatcgtgaagctaatcattaggcagataagcttgaaaacctagttcatggaggagattttggtttggcg |
200 |
Q |
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| T |
40836409 |
tgatcattaaaagtataagatcaaacatgtttatcgtaaagctaatcattagacagataagcttgaaaacctagttcatggaggagattttggtttggcg |
40836508 |
T |
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| Q |
201 |
gagcaca |
207 |
Q |
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||||||| |
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| T |
40836509 |
gagcaca |
40836515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 28559394 - 28559586
Alignment:
| Q |
13 |
ctcagggtggtgggaatggtgtagtctcagaaatctcaaa-tcatcatcttttacattttatcaaagagacgctaaatcttatggatcgttatcattgaa |
111 |
Q |
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|||| |||||||||||||||| |||||| |||||||||| ||| ||||||||| | || || |||| | || |||||||| |||||||||| | | |
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| T |
28559394 |
ctcacggtggtgggaatggtgaagtctcgaaaatctcaaaatcaaaatcttttacctcttctccaagaagtgttagatcttatgaatcgttatcacggga |
28559493 |
T |
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| Q |
112 |
aatataagatcaaacatgtttatcgtgaagctaatcattaggcagataagcttgaaaacctagttcatggaggagattttggtttggcggagc |
204 |
Q |
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| T |
28559494 |
agtgtgagatcaagcatgtttattatgaagctaattgttgagctgataagcttgcaaacttaggtcatggaggagattttggcttggtggagc |
28559586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 385701 - 385553
Alignment:
| Q |
50 |
aaatcatcatcttttacattttatcaaagagacgctaaatcttatggatcgttatcattgaaaatataagatcaaacatgtttatcgtgaagctaatcat |
149 |
Q |
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||||||||||||||||| | || || || ||| | || |||||||||||| | ||| | ||| | ||||||||| ||||||||||| ||| |||||| |
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| T |
385701 |
aaatcatcatcttttacctcttctccaatagatgatatatcttatggatcatggtcactaaaagtgtaagatcaagcatgtttatcggaaagttaatcaa |
385602 |
T |
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| Q |
150 |
taggcagataagcttgaaaacctagttcatggaggagattttggtttgg |
198 |
Q |
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| T |
385601 |
tgtgttgataagcttgcaaacttgggtcatggaggagattttggtttgg |
385553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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