View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12118_low_2 (Length: 428)
Name: NF12118_low_2
Description: NF12118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12118_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 55825038 - 55825443
Alignment:
| Q |
18 |
actatcaggttgacgacatctccttaattcacgttcaattgccacttttgcagaattttccatctctgcataccacaaagccgtctccattgcagccttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825038 |
actatcaggttgacgacatctccttaattcacgttcaattgccacttttgcagaattttccatctctgcataccacaaagccgtctccattgcagccttt |
55825137 |
T |
|
| Q |
118 |
gtttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtacattccttgcaactcagccatgataactgcctctttct |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825138 |
gtttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtacattccttgcaactcagccatgataactgcctctttct |
55825237 |
T |
|
| Q |
218 |
tttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaattttgaaatcgagagtct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825238 |
tttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaattttgaaatcgagagtct |
55825337 |
T |
|
| Q |
318 |
actttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgcttttgctgctttagcctcttccaaaacaagttctagctttttctct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825338 |
actttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgcttttgctgctttagcctcttccaaaacaagttctagctttttctct |
55825437 |
T |
|
| Q |
418 |
gcttct |
423 |
Q |
| |
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|||||| |
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| T |
55825438 |
gcttct |
55825443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 56149943 - 56149538
Alignment:
| Q |
18 |
actatcaggttgacgacatctccttaattcacgttcaattgccacttttgcagaattttccatctctgcataccacaaagccgtctccattgcagccttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149943 |
actatcaggttgacgacatctccttaattcacgttcaattgccacttttgcagaatttgccatctctgcataccacaaagccgtctccattgcagccttt |
56149844 |
T |
|
| Q |
118 |
gtttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtacattccttgcaactcagccatgataactgcctctttct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149843 |
gtttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtacattccttgcaactcagccatgataactgcctctttct |
56149744 |
T |
|
| Q |
218 |
tttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaattttgaaatcgagagtct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149743 |
tttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaattttgaaatcgagagtct |
56149644 |
T |
|
| Q |
318 |
actttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgcttttgctgctttagcctcttccaaaacaagttctagctttttctct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149643 |
actttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgcttttgctgctttagcctcttccaaaacaagttctagctttttctct |
56149544 |
T |
|
| Q |
418 |
gcttct |
423 |
Q |
| |
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|||||| |
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|
| T |
56149543 |
gcttct |
56149538 |
T |
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