View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12118_low_3 (Length: 309)
Name: NF12118_low_3
Description: NF12118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12118_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 28138632 - 28138934
Alignment:
| Q |
1 |
catgcactgggtacaaaaccggaagtttggcagatgttagagaggtgtggtaagtagtgataggttgatgcagaacacaatgcgggagtgtgctatccaa |
100 |
Q |
| |
|
|||||||||| | |||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28138632 |
catgcactggttccaaaaccggaagtttgtctgatgttagagaggtgtggtaagttgtgataggttgatgcagagcacaatgcgggagtgtgctatccaa |
28138731 |
T |
|
| Q |
101 |
accaggcaaaccagtaacaagagtagaagttgagggaacaacaacaattacatcattcaccaagggtggagataaacgcctccccgaatccaaggacaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28138732 |
accaggcaaaccagtaacaagagtagaagttgagggaacaacaacaattacatcattctccaagggtggagataaacgcctccccgaatccaaggacaac |
28138831 |
T |
|
| Q |
201 |
aagagtgagtctgtgtttggtgacttgaactgagaggccctttcttcccttgtagtaggttcctttaagacagagtctaacatagatccaaccctcacag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28138832 |
aagagtgagtctgtgtttggtgacttgaactgagaggccctttcttcccttgtagtaggttcctttaagacagagtctaacatagatccaaccctcacag |
28138931 |
T |
|
| Q |
301 |
gtt |
303 |
Q |
| |
|
||| |
|
|
| T |
28138932 |
gtt |
28138934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 33417221 - 33417157
Alignment:
| Q |
38 |
tagagaggtgtggtaagtagtgataggttgatgcagaacacaatgcgggagtgtgctatccaaac |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| | ||| | || |||||||||||||||||| |
|
|
| T |
33417221 |
tagagaggcgtggtaagtagtgataggttgaggcatagcaccaggcaggagtgtgctatccaaac |
33417157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University