View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12118_low_5 (Length: 282)

Name: NF12118_low_5
Description: NF12118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12118_low_5
NF12118_low_5
[»] chr4 (1 HSPs)
chr4 (47-227)||(52548938-52549114)
[»] chr2 (5 HSPs)
chr2 (166-258)||(42988695-42988787)
chr2 (166-261)||(40060835-40060930)
chr2 (166-260)||(40086734-40086828)
chr2 (166-260)||(40078961-40079055)
chr2 (18-79)||(17126467-17126528)
[»] chr1 (1 HSPs)
chr1 (18-79)||(5230884-5230945)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 47 - 227
Target Start/End: Complemental strand, 52549114 - 52548938
Alignment:
Q  47 aatggtggcacatttgttaactactatatggtaaggatggatatatcattgaagttgtggtttatgtattcatttcatgccttgtaaactctgactttag 146  Q
    |||||||||||||| |||||||||||||||||||||||    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549114 aatggtggcacattcgttaactactatatggtaaggat----aaatcattgaagttgtggtttatgtattcatttcatgccttgtaaactctgactttag 52549019  T
Q  147 tgtatcattgttttggcctagtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttat 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549018 tgtatcattgttttggcctagtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttat 52548938  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 42988787 - 42988695
Alignment:
Q  166 agtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttatgactttgatgctccccttgatgaatttggta 258  Q
    |||||||||||||||| || |||| | ||||  ||||||| || |||||||||||||| ||||||| |||||| || |||||||||| |||||    
T  42988787 agtatcatggaggaacaaattttggtagaacagctggtggtcctttcattgctacaagctatgactatgatgcacctcttgatgaatatggta 42988695  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 40060835 - 40060930
Alignment:
Q  166 agtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttatgactttgatgctccccttgatgaatttggtatgt 261  Q
    |||| ||||||||||| |||||||| |||| | | || ||||| ||||||||||||||||| || |||||||| ||  ||||||||| ||||||||    
T  40060835 agtaccatggaggaaccaactttgaccgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatgaatatggtatgt 40060930  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 40086734 - 40086828
Alignment:
Q  166 agtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttatgactttgatgctccccttgatgaatttggtatg 260  Q
    |||| ||||||||||| |||||||| |||| | |||| ||||| |||||||| ||||||||||| |||||||| ||  ||||||| | |||||||    
T  40086734 agtaccatggaggaaccaactttgaccgaagtactggaggaccattcattgcaacaagttatgattttgatgcaccgattgatgagtatggtatg 40086828  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 40078961 - 40079055
Alignment:
Q  166 agtatcatggaggaactaactttgatcgaacttctggtggacccttcattgctacaagttatgactttgatgctccccttgatgaatttggtatg 260  Q
    |||| ||||||||||| |||||||| |||| | | || ||||| |||||||||||||||||||| | |||||| ||  ||||||| | |||||||    
T  40078961 agtaccatggaggaaccaactttgaccgaagtaccggcggacctttcattgctacaagttatgattatgatgcaccgattgatgagtatggtatg 40079055  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 17126467 - 17126528
Alignment:
Q  18 tggcattctctgttgcaagatttgtacaaaatggtggcacatttgttaactactatatggta 79  Q
    |||||||||| ||||| ||||| ||||| ||| | ||| ||| |||||||||||||||||||    
T  17126467 tggcattctcggttgccagattcgtacagaatcgcggctcatatgttaactactatatggta 17126528  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 5230884 - 5230945
Alignment:
Q  18 tggcattctctgttgcaagatttgtacaaaatggtggcacatttgttaactactatatggta 79  Q
    |||||| ||| ||||| |||||  |||||||| ||||| | |||||||||||||||||||||    
T  5230884 tggcatactcagttgctagattcatacaaaatcgtggctcctttgttaactactatatggta 5230945  T

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