View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12118_low_6 (Length: 280)
Name: NF12118_low_6
Description: NF12118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12118_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 31129292 - 31129544
Alignment:
| Q |
15 |
tgtgcaacacgggtaacctacatgctatttgcaataactgagggaatattaattaatatctcaacgtcgactttactctcagacacaccatctatataaa |
114 |
Q |
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| T |
31129292 |
tgtgcaacacgggtaacctacatgctatttgcaataactgagggaatattaattaatatctcaacgtcgactttactctcagacacaccatctatataaa |
31129391 |
T |
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| Q |
115 |
tcaattggttcagtagtgccaatcatcaaaatatcttagtttcatcattcacattctatagtaaacatgcatagttacttctctcagtgtagtccagaaa |
214 |
Q |
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| T |
31129392 |
tcaattggttcagtagtgccaatcatcaaaatatcttagtttcatcattcatattctatagtaaacatgcatagttacttctctcagtttagtccaaata |
31129491 |
T |
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| Q |
215 |
tgtattttgcaaccacaatgctcctcttcatattaacatacatatctataaac |
267 |
Q |
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| T |
31129492 |
tgtattttgcaaccacaatgctcctcctcacattagcatacatatctataaac |
31129544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 92 - 267
Target Start/End: Complemental strand, 31137825 - 31137648
Alignment:
| Q |
92 |
ctcagacacaccatctatataaatcaattggttcagtagtgccaatcatcaaaatatcttagtttcatcat-tcacatt--ctatagtaaacatgcatag |
188 |
Q |
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| T |
31137825 |
ctcaggcacaccatatatataaatcaattagttcagtaatgcaaaacatcaaaatctcttaatttcatcctctcccataggcaatagcaat-attcatcc |
31137727 |
T |
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| Q |
189 |
ttacttctctcagtgtagtccagaaatgtattttgcaaccacaatgctcctcttcatattaacatacatatctataaac |
267 |
Q |
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| T |
31137726 |
ttacttgtctcaattgagtccaaaaatgtattttgcaatcacaatgctcctcctcctattaacatacatatctataaac |
31137648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 31151328 - 31151390
Alignment:
| Q |
205 |
agtccagaaatgtattttgcaaccacaatgctcctcttcatattaacatacatatctataaac |
267 |
Q |
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| T |
31151328 |
agtccaaaaatgtattttgcaatcacaatgctcctcctcctattaacatacatatctataaac |
31151390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 24469081 - 24469023
Alignment:
| Q |
207 |
tccagaaatgtattttgcaaccacaatgctcctcttcatattaacatacatatctataa |
265 |
Q |
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| T |
24469081 |
tccagaaatgtattttgcaaccacaatgctcattctctttttaacatacatttctataa |
24469023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 237
Target Start/End: Complemental strand, 24490334 - 24490306
Alignment:
| Q |
209 |
cagaaatgtattttgcaaccacaatgctc |
237 |
Q |
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| T |
24490334 |
cagaaatgtattttgcaaccacaatgctc |
24490306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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