View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12119_high_11 (Length: 327)
Name: NF12119_high_11
Description: NF12119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12119_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 28 - 278
Target Start/End: Complemental strand, 5352166 - 5351917
Alignment:
| Q |
28 |
cataacattgcaaataaaacacaggacaaggcaacaatgcaaataaaattctaaatgtaaataaagaacaaatacgttttattaattgaataaaaatcac |
127 |
Q |
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| T |
5352166 |
cataacattgtaaatcaaacacaggacaaggcaacaatgcaaataaaattctaaatgcaaataaagaacaa-tacatttttttaattgaataaaaatcac |
5352068 |
T |
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| Q |
128 |
gattgaagcaatttatggaacttaaagttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattct |
227 |
Q |
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| T |
5352067 |
gattgaagcaatttatggaacttaaagttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattct |
5351968 |
T |
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| Q |
228 |
tggcatcttgatcaatcaaatcgccatcaccgttaaattttgctggaggct |
278 |
Q |
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| T |
5351967 |
tggcatcttgatcaatcaaatcgccatcaccgttaaattttgctggaggct |
5351917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 153 - 278
Target Start/End: Complemental strand, 5345024 - 5344899
Alignment:
| Q |
153 |
agttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcgcc |
252 |
Q |
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| T |
5345024 |
agttgtttcaatttttgccttgaagttgcagagtaaatgccttcaaggacaacagaattgccaacaacctattcttagcatcttcatcaatcaaatcacc |
5344925 |
T |
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| Q |
253 |
atcaccgttaaattttgctggaggct |
278 |
Q |
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| T |
5344924 |
atcactattaaattttgctggaggct |
5344899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 280
Target Start/End: Original strand, 5325075 - 5325196
Alignment:
| Q |
159 |
ttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcgccatcacc |
258 |
Q |
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| T |
5325075 |
ttcaatttctgccttgaagtttaagggtaaattccttcaaggacacaataactttcttcaatctattcttgatctcttcatcaaccaagtcaccatcatc |
5325174 |
T |
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| Q |
259 |
gttaaattttgctggaggctta |
280 |
Q |
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|||| |||| ||||| ||||| |
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| T |
5325175 |
gttacatttatctggatgctta |
5325196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 280
Target Start/End: Original strand, 5338089 - 5338216
Alignment:
| Q |
153 |
agttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcgcc |
252 |
Q |
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| T |
5338089 |
agttgtttcaaatttaaccttgaagctgaagggtaaattcctttaaggacacaagaacttccttgaatctattcttgatctcttcatcaaccaagtcacc |
5338188 |
T |
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| Q |
253 |
atcaccgttaaattttgctggaggctta |
280 |
Q |
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| T |
5338189 |
atcatcgtcaaatttatctggatgctta |
5338216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 14535283 - 14535375
Alignment:
| Q |
164 |
tttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcgccatca |
256 |
Q |
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| T |
14535283 |
tttttgccttgaagccttagagtaaatgcctgcaaagataaaagaacttgtttcaacttattcttagcctcttcatcaatcaaatcgccatca |
14535375 |
T |
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