View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12119_high_2 (Length: 568)

Name: NF12119_high_2
Description: NF12119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12119_high_2
NF12119_high_2
[»] chr5 (1 HSPs)
chr5 (16-245)||(5313609-5313833)
[»] chr1 (2 HSPs)
chr1 (393-494)||(7016123-7016224)
chr1 (416-460)||(23915668-23915712)
[»] chr3 (2 HSPs)
chr3 (418-493)||(1072782-1072857)
chr3 (393-493)||(9505169-9505269)
[»] chr4 (2 HSPs)
chr4 (396-502)||(19455209-19455315)
chr4 (393-460)||(48339147-48339214)
[»] scaffold0204 (1 HSPs)
scaffold0204 (393-460)||(26669-26736)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 5313609 - 5313833
Alignment:
Q  16 ttcttcaatacagataactgattaatgcttgacaaacttcaaatgacatgtctggtatgtttatagtagttggttgttcctttttcttctcagaaattac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5313609 ttcttcaatacagataactgattaatgcttgacaaacttcaaatgacatgtcaggtatgtttatagtagttggttgttcctttttcttctcagaaattac 5313708  T
Q  116 aaacatgcgttctaaaactgctgactgtgcaccaagaacacatttatgagctcttatgcttttattttatcagatgcaccgaccttaatcacgacgcctg 215  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||| |||    
T  5313709 aaacatgcgttctaaaactgctgaccatgcaccaagaacacatttatgagctcttatgc-----ttttatcagatgcaccgaccttaatcacgacgtctg 5313803  T
Q  216 ttaagacatccaatcttaacgctcgagcga 245  Q
    ||||||||||||||||||||||||||||||    
T  5313804 ttaagacatccaatcttaacgctcgagcga 5313833  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 494
Target Start/End: Original strand, 7016123 - 7016224
Alignment:
Q  393 ttcgacaattaatttgtgaaacatggttcatgaatcaaatgagtttaactttagctgaaaactaagtttgctaacataatgaactaaacttgagttatat 492  Q
    |||||||||| ||||||  ||| ||||||||||| |||||||| | ||||| |||| ||||||||||||| |||| |||| | || | |||||| |||||    
T  7016123 ttcgacaattgatttgttgaacttggttcatgaaccaaatgagctgaacttgagctcaaaactaagtttgttaacctaataagctgagcttgagctatat 7016222  T
Q  493 ac 494  Q
    ||    
T  7016223 ac 7016224  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 416 - 460
Target Start/End: Original strand, 23915668 - 23915712
Alignment:
Q  416 tggttcatgaatcaaatgagtttaactttagctgaaaactaagtt 460  Q
    ||||||||||| |||||||| | ||||||||||||||| ||||||    
T  23915668 tggttcatgaaccaaatgagctgaactttagctgaaaattaagtt 23915712  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 493
Target Start/End: Original strand, 1072782 - 1072857
Alignment:
Q  418 gttcatgaatcaaatgagtttaactttagctgaaaactaagtttgctaacataatgaactaaacttgagttatata 493  Q
    ||||||||| |||||||||| |  || ||| ||||| |||||||| ||| |||||||||| |||||||||||||||    
T  1072782 gttcatgaaccaaatgagttgagtttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatata 1072857  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 493
Target Start/End: Original strand, 9505169 - 9505269
Alignment:
Q  393 ttcgacaattaatttgtgaaacatggttcatgaatcaaatgagtttaactttagctgaaaactaagtttgctaacataatgaactaaacttgagttatat 492  Q
    |||||||||||| | ||  ||| ||||||||||| |||||||||| ||||| ||||||||| |||||| | |||   ||||| || |||||||| |||||    
T  9505169 ttcgacaattaactcgttgaacttggttcatgaaccaaatgagttgaacttgagctgaaaattaagttcgttaaataaatgagctgaacttgagatatat 9505268  T
Q  493 a 493  Q
    |    
T  9505269 a 9505269  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 502
Target Start/End: Original strand, 19455209 - 19455315
Alignment:
Q  396 gacaattaatttgtgaaacatggttcatgaatcaaatgagtttaactttagctgaaaactaagtttgctaacataatgaactaaacttgagttatataca 495  Q
    ||||||||||| ||  ||| |||||||||||||||||||| | ||||| || |||||| |||||||| || |  |||||  | |||||||| ||||||||    
T  19455209 gacaattaattcgttgaacttggttcatgaatcaaatgagctgaacttgagttgaaaattaagtttgttatctaaatgagttgaacttgagctatataca 19455308  T
Q  496 attcgac 502  Q
     ||||||    
T  19455309 gttcgac 19455315  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 460
Target Start/End: Original strand, 48339147 - 48339214
Alignment:
Q  393 ttcgacaattaatttgtgaaacatggttcatgaatcaaatgagtttaactttagctgaaaactaagtt 460  Q
    |||||||| | ||||||  ||| |||||||||||||||||||||  ||||| ||||||||| ||||||    
T  48339147 ttcgacaactgatttgttgaacttggttcatgaatcaaatgagtcgaacttgagctgaaaattaagtt 48339214  T

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Target: scaffold0204 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 460
Target Start/End: Original strand, 26669 - 26736
Alignment:
Q  393 ttcgacaattaatttgtgaaacatggttcatgaatcaaatgagtttaactttagctgaaaactaagtt 460  Q
    |||||||| | ||||||  ||| |||||||||||||||||||||  ||||| ||||||||| ||||||    
T  26669 ttcgacaactgatttgttgaacttggttcatgaatcaaatgagtcgaacttgagctgaaaattaagtt 26736  T

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