View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12119_high_5 (Length: 369)
Name: NF12119_high_5
Description: NF12119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12119_high_5 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 40565691 - 40566062
Alignment:
| Q |
1 |
aacatgactatatagt---aattgcaatgtctctaagcatgctagcttttgataatgtttaattaatttcattttgctaacacaggtgtgcattctgagt |
97 |
Q |
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| T |
40565691 |
aacatgactatatagtagtaattgcaatgtctctaagcatgctagcttttgataatgtttaattaatttcattttgctaacacaggtgtgcattctgagt |
40565790 |
T |
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| Q |
98 |
tctgacctattctacttttaaaacttaaacaactgattagagacattgcaatcactgttaccaaaaactaaagttacattataataaatgttagacaaaa |
197 |
Q |
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| T |
40565791 |
tctgacctattctacttttaaaacttaaacaactgattagagacattgcaatcactgttaccaaaaactaaagttacattataataaatgttagacaaaa |
40565890 |
T |
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| Q |
198 |
ccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaaggttacaaggagaataaataaatactaaacaaa |
297 |
Q |
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| T |
40565891 |
ccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaaggttacaaggagaataaataaatactaaacaaa |
40565990 |
T |
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| Q |
298 |
atctaaggatttgtataccgatgaacctgnnnnnnntagcaaagccatggctgtgcactcaaaacaattgct |
369 |
Q |
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| T |
40565991 |
atctaaggatttgtataccgatgaacctgaaaaaaatagcaaagccatggctgtgcactcaaaacaattgct |
40566062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 264
Target Start/End: Original strand, 40570490 - 40570650
Alignment:
| Q |
100 |
tgacctattctacttttaaaacttaaacaactgattagagacattgcaatcactgttaccaaaaactaaagttacattataataaatgttagacaaaacc |
199 |
Q |
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| T |
40570490 |
tgacctgttctacctttaaatcttaaacaactagttagaaacgttgcaatcactgttgccaaaaactaaagttacattaaaataaatattagac-agacc |
40570588 |
T |
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| Q |
200 |
gtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaa |
264 |
Q |
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| T |
40570589 |
at-cttaatttgatcattcgattccgt--aggaaaaatcagtcattttgatttttctatttttaa |
40570650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 40595253 - 40595321
Alignment:
| Q |
188 |
ttagacaaaaccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttct |
256 |
Q |
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| T |
40595253 |
ttagacaaaaccatgtttaatttcatcattccaatctgtacaacaaaaatcattcattttgacttttct |
40595321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 8490224 - 8490271
Alignment:
| Q |
139 |
gacattgcaatcactgttaccaaaaactaaagttacattataataaat |
186 |
Q |
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| T |
8490224 |
gacattgcaatcactgttgccaaaaactaaagttacattataataaat |
8490271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 8490288 - 8490376
Alignment:
| Q |
173 |
acattataataaatgttagacaaaaccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaa |
264 |
Q |
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| T |
8490288 |
acattataataaataatagacaaaaccatctt-aatttgatcattcaattccata--ggaaaaatcagtcattttgacttttctatttttaa |
8490376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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