View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12119_high_6 (Length: 367)
Name: NF12119_high_6
Description: NF12119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12119_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 32706698 - 32707055
Alignment:
| Q |
1 |
attagctccttcctctttattatatttggatttctttgtttgtagagattgaaaattgttactgcgctgttttcactattactttttcctatatcggaat |
100 |
Q |
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| T |
32706698 |
attagctccttcctctttattatatttggatttctttgtttgtagagattgaaaattgttactgcgctgttttcactattactttttcctatatcagaat |
32706797 |
T |
|
| Q |
101 |
gcgtcgatttcaggtaacgacgattacaaattctactttccaagacacaggtatagcagctataggcgtggagcatcaatttcacttccaaatatcccag |
200 |
Q |
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| T |
32706798 |
gcgtcgatttcagctaacgacgattacaaattctactttccaagacacaggcatagcagctataggcgtggtgcatcaatttcacttccaaatatcccag |
32706897 |
T |
|
| Q |
201 |
atatccctttaagcatggtgttgcctcattttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaatgtctaa |
300 |
Q |
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| T |
32706898 |
atatccctttaagcatggtgttgcctcattttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaatgtctaa |
32706997 |
T |
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| Q |
301 |
attgtgccgctacggaaatattttactagcatgcgttggttatgaatatgaatataat |
358 |
Q |
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| T |
32706998 |
attgtgccgctacggaaatattttactagcatgcgttggttatgaatatgaatataat |
32707055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 32749254 - 32749306
Alignment:
| Q |
25 |
tttggatttctttgtttgtagagattgaaaattgttactgcgctgttttcact |
77 |
Q |
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| T |
32749254 |
tttggatttctatgtttgtagagattgaaaattggtactatgctgctttcact |
32749306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 120 - 358
Target Start/End: Original strand, 3001615 - 3001854
Alignment:
| Q |
120 |
acgattacaaattctactttccaagacacaggtatagcagctataggcgtggagcatcaatttcacttccaaatatcccagatatccctttaagcatggt |
219 |
Q |
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| T |
3001615 |
acgattacaaattctactctccaagacacaggtatagcaggtataggcgtggtgcatcaatttcacttccaaatatcccacatatccctttaagcatggt |
3001714 |
T |
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| Q |
220 |
gttgcctcattttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaatgtctaaattg-tgccgctacggaaa |
318 |
Q |
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| T |
3001715 |
gttgcctcattttggaaaatgaagtgctgctttcaagatgctcaatacgtaagctactgcagttttttgtgcaatgtctaaattgttgccactacggaaa |
3001814 |
T |
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| Q |
319 |
tattttactagcatgcgttggttatgaatatgaatataat |
358 |
Q |
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| T |
3001815 |
tattttactagcatgtgttggttatgaatatgaatataat |
3001854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 3001217 - 3001283
Alignment:
| Q |
27 |
tggatttctttgtttgtagagattgaaaattgttactgcgctgttttcactattactttttcctata |
93 |
Q |
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|||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||| |
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| T |
3001217 |
tggatttctttgtttgtagatattgaaaattggtactgtgctgttttcactgttactttttcctata |
3001283 |
T |
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