View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12119_high_9 (Length: 341)
Name: NF12119_high_9
Description: NF12119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12119_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 29121602 - 29121331
Alignment:
| Q |
8 |
tccaataacttgattaaagtgagtgaaggctcatcaaagcatgacttttttattgaacacattttctaaagtaaaaatatttaaaaatgattattacagt |
107 |
Q |
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| T |
29121602 |
tccaataacttgattaaagtgagtgaaggctcatcaaagcatgacttttttattgaacacattttctaaagtaaaaatatttaaaaatgattattacagt |
29121503 |
T |
|
| Q |
108 |
taccatagtctctaaaagaatttgatttgaactatgtctctaaaatgataagatggatgatagaaaggaattgactaaccagcatgtgcaaaggtatccc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
29121502 |
taccatagtctctaaaagaatttgatttgaactatgtctctaaaatgataagatggatgatag-aatgaattgactaaccagcatgtgcaaaggtatccc |
29121404 |
T |
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| Q |
208 |
aaatgctaggagttcttccatcttcattagcagctccttccacctattcatcataaatcacaagtacaacaat |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121403 |
aaatgctaggagttcttccatcttcattagcagctccttccacctattcatcataaatcacaagtacaacaat |
29121331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 29121320 - 29121282
Alignment:
| Q |
300 |
gtaatgaaattgcatggttacttctttttggggtaaagt |
338 |
Q |
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| T |
29121320 |
gtaatgaaattgcatggttacttctttttggggtaaagt |
29121282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 39641139 - 39640872
Alignment:
| Q |
11 |
aataacttgattaaagtgagtgaaggctcatcaaagcatgacttttttattgaacacattttctaaagtaaaaatatttaaaaatgattattacagttac |
110 |
Q |
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| T |
39641139 |
aataacttgattaaagtgagtgaaggctcatcaaagcatgacttttttattgaacacgttttctaaagtaaaaatatttaaaaatgattattacagttac |
39641040 |
T |
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| Q |
111 |
catagtctctaaaagaatttgatttgaactatgtctctaaaatgataagatggatgatagaaaggaattgactaaccagcatgtgcaaaggtatcccaaa |
210 |
Q |
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|||||||||||||| || ||||||||||||||| ||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
39641039 |
catagtctctaaaaaaaattgatttgaactatgactcaaaaatgataagatggatgatag-aatgaattgactaaccagcatgtgcaaaggtatcccaaa |
39640941 |
T |
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| Q |
211 |
tgctaggagttcttccatcttcattagcagctccttccacctattcatcataaatcacaagtacaacaat |
280 |
Q |
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| T |
39640940 |
tgctaggagttcttccatcttcattagcagctccttccacctattcatcat-aatcacaagtacaacaat |
39640872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 149 - 280
Target Start/End: Complemental strand, 39630331 - 39630202
Alignment:
| Q |
149 |
aaaatgataagatggatgatagaaaggaattgactaaccagcatgtgcaaaggtatcccaaatgctaggagttcttccatcttcattagcagctccttcc |
248 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39630331 |
aaaatgataagatggatgatagaatg-aattgactaaccagcatgtgcaaaggtatcccaaatgctaggagttcttccatcttcattagcagctccttcc |
39630233 |
T |
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| Q |
249 |
acctattcatcataaatcacaagtacaacaat |
280 |
Q |
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| T |
39630232 |
acctattcatcat-aatcacaagtacaacaat |
39630202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 39630190 - 39630152
Alignment:
| Q |
300 |
gtaatgaaattgcatggttacttctttttggggtaaagt |
338 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |
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| T |
39630190 |
gtaatgaaattgcagggttacttctttttggggtaaagt |
39630152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 39640840 - 39640803
Alignment:
| Q |
301 |
taatgaaattgcatggttacttctttttggggtaaagt |
338 |
Q |
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||||||||||||||||||||||||||||| |||||||| |
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| T |
39640840 |
taatgaaattgcatggttacttctttttgaggtaaagt |
39640803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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