View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12119_low_1 (Length: 588)
Name: NF12119_low_1
Description: NF12119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12119_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 5 - 582
Target Start/End: Original strand, 5351823 - 5352400
Alignment:
| Q |
5 |
gagaagcataggctacctcaccatgcaaattaagctgcatttagcgacattataattaagataacaacattgttgatacatataattaatcaaataaaag |
104 |
Q |
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| T |
5351823 |
gagaaacataggctacctcaccatgcaaattaagctgcatttagcgacattataattaagataacaacattgttgatacatataattaatcaaataaaag |
5351922 |
T |
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| Q |
105 |
tactgcatcaagacattattctctctcgttcgtttttagttgtcgttttaagtttatttacatgtatcaacaaataaatgtaacgcaacttttatacaaa |
204 |
Q |
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| T |
5351923 |
tactgcatcaagacattattctctctcgttcgtttttagttgtcgttttaagtttatttacatgtatcaacaaataaatgtaacacaacttttatacaaa |
5352022 |
T |
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| Q |
205 |
atcgacggttaaaaaggaatggagagagtgannnnnnnggttcatactcacagttccacaaactttaggcatttctccaaggatagcatgaagcaaagaa |
304 |
Q |
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| T |
5352023 |
atcgatggttaaaaaggaatggagagagtgatttttttggttcatactcacagttccacaaactttaggcatttctccaaggatagcatgaagcaaagaa |
5352122 |
T |
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| Q |
305 |
gacttgccagccccaactggtccacaaactgcaactttttcaccatgtttgatgccgaaattaatttgtctcaaagtaggtgtaactgatccctcatccc |
404 |
Q |
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| T |
5352123 |
gacttgccagccccaactggtccacaaactgcaactttttcaccatgtttgatgccgaaattaatttgtctcaaagtaggtgtaactgatccctcatccc |
5352222 |
T |
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| Q |
405 |
agctgaaatcagcttcctctatctcaatgcatttacctgattttgaaacataaatgctcttcttttggtaggaagtatttatctcatcatcaaacagaaa |
504 |
Q |
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| T |
5352223 |
aactgaaatcagcttcctctatctcaatgcatttacctgattttgaaacataaatgctcttcttttggtaggaagtatttatctcatcatcaaacagaaa |
5352322 |
T |
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| Q |
505 |
agtgttaagcctatcaaatgagactttaacttgaataataacagaaacagcctcgggtataaacctcacaggttctgc |
582 |
Q |
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| T |
5352323 |
aatgttaagcctatcaaatgagactttaacttgaataataacagaaacagcttcgggtataaacctcacaggttctgc |
5352400 |
T |
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