View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12119_low_3 (Length: 253)
Name: NF12119_low_3
Description: NF12119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12119_low_3 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 51772620 - 51772391
Alignment:
| Q |
5 |
cgagagagatgaataggtttgtgtatattaatctgggacttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtc |
104 |
Q |
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| T |
51772620 |
cgagagatatgaataggtttgtgtatattaatctgggacttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtc |
51772521 |
T |
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| Q |
105 |
actgcaaaaggcaaccttctcattggagatgaagaggagaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagactctcg |
204 |
Q |
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| T |
51772520 |
actgcaaaaggcaaccttctcattggagatgaagaggagaccggctagagggccagatgtggtggatagataacactgcgaaattttcaacaggctctcg |
51772421 |
T |
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| Q |
205 |
tcctcactcacactaaaataccgcataaac |
234 |
Q |
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| T |
51772420 |
tcctcactcacactaaaataccgcataaac |
51772391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 43 - 196
Target Start/End: Complemental strand, 51780438 - 51780285
Alignment:
| Q |
43 |
cttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtcactgcaaaaggcaaccttctcattggagatgaagagga |
142 |
Q |
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| T |
51780438 |
cttaccttatagcggatcctacacatttgacctttctgattatagacttttattgatctgtcactgcaaaaggcaaccttttcattggagatgaagagga |
51780339 |
T |
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| Q |
143 |
gaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaaca |
196 |
Q |
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| T |
51780338 |
ggccagctagagggccagatgtggtggaaagataacagtgagaaactttcaaca |
51780285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 51808160 - 51808013
Alignment:
| Q |
40 |
ggacttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtcactgcaaaaggcaaccttctcattggagatgaaga |
139 |
Q |
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| T |
51808160 |
ggacataccttatatcggatcctacgcatttgacctttctgattgaagacttttattgatctctcactgcagaaggcaaccttttcattggagatgaaga |
51808061 |
T |
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| Q |
140 |
ggagaccagctagaggaccagatgtggtggatagataacactgcgaaa |
187 |
Q |
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| T |
51808060 |
gcagaccagctagaggaccagatgtggtggatagataacactgtgaaa |
51808013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 41 - 234
Target Start/End: Complemental strand, 51804206 - 51804013
Alignment:
| Q |
41 |
gacttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtcactgcaaaaggcaaccttctcattggagatgaagag |
140 |
Q |
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| T |
51804206 |
gacttaccttatagcggatcctacgcatttgacctttctgattgaagacttttattgttctctcactgcagaaggccaccttttcattggagatgaagag |
51804107 |
T |
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| Q |
141 |
gagaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagactctcgtcctcactcacactaaaataccgcataaac |
234 |
Q |
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| T |
51804106 |
gagaccagatagaggaccggatgtggtggaaagataacactgcgaaacttttgatagcctctctccttctctcacactaaaatactgcctaaac |
51804013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 12196136 - 12196221
Alignment:
| Q |
94 |
attgatctgtcactgcaaaaggcaaccttctcattggagatgaagaggagaccagctagaggaccagatgtggtggatagataaca |
179 |
Q |
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| T |
12196136 |
attgatctctcactacaaaaggcaattttattagttgatatgaagagtaggcctgctagaggaccagatgttgttgatagataaca |
12196221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 51761472 - 51761423
Alignment:
| Q |
154 |
ggaccagatgtggtggatagataacactgcgaaattttcaacagactctc |
203 |
Q |
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| T |
51761472 |
ggaccagatgtggtggacagataacagtgtgaaactttcaacagcctctc |
51761423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 43 - 196
Target Start/End: Complemental strand, 7082 - 6927
Alignment:
| Q |
43 |
cttaccttatagcggatcctacgcatttgacctttctgattaaagacttttattgatctgtcactgcaaaaggcaaccttctcattggagatgaagagga |
142 |
Q |
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| T |
7082 |
cttaccttatagcggatcctacacatttgacctttctgattatagacttttattgatctgtcactgcaaaaggcaaccttttcattggagatgaagagga |
6983 |
T |
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| Q |
143 |
gaccagctag--aggaccagatgtggtggatagataacactgcgaaattttcaaca |
196 |
Q |
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| T |
6982 |
ggccagctaggaggggccagatgtggtggaaagataacagtgagaaactttcaaca |
6927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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