View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12120_high_3 (Length: 298)

Name: NF12120_high_3
Description: NF12120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12120_high_3
NF12120_high_3
[»] chr1 (4 HSPs)
chr1 (17-230)||(51190954-51191167)
chr1 (246-282)||(51191167-51191203)
chr1 (142-194)||(29230054-29230107)
chr1 (17-61)||(41505790-41505834)
[»] chr8 (2 HSPs)
chr8 (17-199)||(900476-900665)
chr8 (142-202)||(32691732-32691793)
[»] chr7 (1 HSPs)
chr7 (21-52)||(20234580-20234611)
[»] chr4 (2 HSPs)
chr4 (129-202)||(19262933-19263007)
chr4 (18-59)||(52333715-52333756)
[»] chr3 (1 HSPs)
chr3 (17-58)||(47249400-47249441)
[»] chr2 (1 HSPs)
chr2 (23-60)||(35378443-35378480)
[»] chr6 (1 HSPs)
chr6 (17-45)||(31624376-31624404)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 51190954 - 51191167
Alignment:
Q  17 tgtcagtatataagctcaaataagccaattgaaacatgccctaagttgttgtcttaaagtcatttggaaactccaattgtacataactctaaatcaatga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51190954 tgtcagtatataagctcaaataagccaattgaaacatgccctaagttgttgtcttaaagtcatttggaaactccaattgtacataactctaaatcaatga 51191053  T
Q  117 aacaccgacacaaacacagacattggacatgacattgacaccggtaactatttgaaaaaatgacataatgaatgtaatcacatgtgccagcgatgtgttt 216  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51191054 aacaccgacacaaacacagacattgaacatgacattgacaccggtaactatttgaaaaaatgacataatgaatgtaatcacatgtgccagcgacgtgttt 51191153  T
Q  217 gtgtcagacagtga 230  Q
    ||||||||||||||    
T  51191154 gtgtcagacagtga 51191167  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 51191167 - 51191203
Alignment:
Q  246 aaaatatgtcttcaatccaaagtgtggtgctacatag 282  Q
    |||||||||||||||||||||||||||||||||||||    
T  51191167 aaaatatgtcttcaatccaaagtgtggtgctacatag 51191203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 29230054 - 29230107
Alignment:
Q  142 gacatgacattgacaccggtaactatttgaaaaaatgacataa-tgaatgtaat 194  Q
    |||| |||||||||||||||||  |||||| |||||||||||| ||||||||||    
T  29230054 gacacgacattgacaccggtaataatttgagaaaatgacataattgaatgtaat 29230107  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 41505790 - 41505834
Alignment:
Q  17 tgtcagtatataagctcaaataagccaattgaaacatgccctaag 61  Q
    |||||||| ||||||||||||||||||||  ||||| ||||||||    
T  41505790 tgtcagtagataagctcaaataagccaatccaaacaagccctaag 41505834  T

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Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 900665 - 900476
Alignment:
Q  17 tgtcagtatataagctcaaataagccaattgaaacatgccctaagttgttgtcttaaagtcatttggaaactccaattgtacataactctaaatcaatga 116  Q
    ||||||||||||||||||||||| |||||| ||||| | |||||||| | ||||||| ||||||||||||||||||||||||| ||||||||| |||||     
T  900665 tgtcagtatataagctcaaataaaccaattcaaacaggtcctaagttatcgtcttaa-gtcatttggaaactccaattgtacaaaactctaaagcaatgc 900567  T
Q  117 aacaccgacacaaacacagacattggac------atgacattgacaccggtaactatttg---aaaaaatgacataat-gaatgtaatcacat 199  Q
    ||||| |||||||| ||  |||||||||      |||||||| |||||  || |||||||   ||||||||||||||| ||||||||||||||    
T  900566 aacacagacacaaaaac--acattggacacaacaatgacattaacaccaatatctatttgaaaaaaaaatgacataatagaatgtaatcacat 900476  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 32691732 - 32691793
Alignment:
Q  142 gacatgacattgacaccggtaactatttgaaaaaatgacataa-tgaatgtaatcacatgtg 202  Q
    |||| ||||||||||||||||   |||| | |||||||||||| ||||||||||||||||||    
T  32691732 gacacgacattgacaccggtagtaatttaagaaaatgacataattgaatgtaatcacatgtg 32691793  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 20234580 - 20234611
Alignment:
Q  21 agtatataagctcaaataagccaattgaaaca 52  Q
    ||||||||||||||||||||||||||||||||    
T  20234580 agtatataagctcaaataagccaattgaaaca 20234611  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 19263007 - 19262933
Alignment:
Q  129 aacacagacattggacatgacattgacaccggtaactatttgaaaaaatgacataat-gaatgtaatcacatgtg 202  Q
    ||||||||||  ||||| |||| ||||||| ||||  |||||| || |||||||||| |||||||||||||||||    
T  19263007 aacacagacaccggacacgacactgacaccagtaataatttgagaagatgacataattgaatgtaatcacatgtg 19262933  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 52333715 - 52333756
Alignment:
Q  18 gtcagtatataagctcaaataagccaattgaaacatgcccta 59  Q
    ||||||| |||||||||||||||||||| |||||| ||||||    
T  52333715 gtcagtaaataagctcaaataagccaatcgaaacaggcccta 52333756  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 47249441 - 47249400
Alignment:
Q  17 tgtcagtatataagctcaaataagccaattgaaacatgccct 58  Q
    |||||| ||||||||||||||||||||||  |||||||||||    
T  47249441 tgtcagcatataagctcaaataagccaatacaaacatgccct 47249400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 35378480 - 35378443
Alignment:
Q  23 tatataagctcaaataagccaattgaaacatgccctaa 60  Q
    |||||||||||||||||||||||  |||||||||||||    
T  35378480 tatataagctcaaataagccaatccaaacatgccctaa 35378443  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 31624376 - 31624404
Alignment:
Q  17 tgtcagtatataagctcaaataagccaat 45  Q
    |||||||||||||||||||||||||||||    
T  31624376 tgtcagtatataagctcaaataagccaat 31624404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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