View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12120_low_11 (Length: 266)
Name: NF12120_low_11
Description: NF12120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12120_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 41939834 - 41939597
Alignment:
| Q |
16 |
gtgcaaaacatgtccatagctgtcttgtctttatagttaaaacacacatacatcaaactatgactgaaaagattcattttcttgctcaatttcagagcca |
115 |
Q |
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| T |
41939834 |
gtgcaaaacatgtccatagctgtcttgtctttatagttaaaacatacatacatcaaactatgactgaaaagattcattttcttgctcaatttcagagcca |
41939735 |
T |
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| Q |
116 |
ccatgttcatcatcttgatcaagacattcgtcaattccataagctttatgtccatttccaaaagccttgatatgatctttaagtgatcttttgtgcttaa |
215 |
Q |
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| T |
41939734 |
ccatgttcatcatcttgatcaagacattcgtcaattccataagctttatgtccatttccaaaagccttgatatgatctttaagtgatcttttgtgcttaa |
41939635 |
T |
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| Q |
216 |
aatcggacccacaacaacaataccaaagtttcccacag |
253 |
Q |
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| T |
41939634 |
aatcggacccacaacaacaataccaaagtttcccacag |
41939597 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 36570198 - 36570109
Alignment:
| Q |
163 |
atgtccatttccaaaagccttgatatgatctttaagtgatcttttgtgcttaaaatcggacccacaacaacaataccaaagtttcccaca |
252 |
Q |
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| T |
36570198 |
atgtccacttccaaaagctttgatatgatctttaagagacctcttgtgtttaaaatcagaaccacagatacaataccaaagctttccaca |
36570109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 252
Target Start/End: Original strand, 21035565 - 21035671
Alignment:
| Q |
146 |
tcaattccataagctttatgtccatttccaaaagccttgatatgatctttaagtgatcttttgtgcttaaaatcggacccacaacaacaataccaaagtt |
245 |
Q |
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| T |
21035565 |
tcaattccataagcagcatgaccactcccaaaagctcttatatgatctttaagcgatcgcttatgcttaaaatccgaaccacaaagacaataccaaagct |
21035664 |
T |
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| Q |
246 |
tcccaca |
252 |
Q |
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| T |
21035665 |
ttccaca |
21035671 |
T |
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