View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12120_low_12 (Length: 225)
Name: NF12120_low_12
Description: NF12120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12120_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 40855309 - 40855097
Alignment:
| Q |
1 |
aaactaataaatcaattggaaaagggaaattgataatatcaaattaagattatttgtgaaaagataatgaaaagaaagtgtacctacagcgaactttgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
40855309 |
aaactaataaatcaattggaaaagggaaattgataatatcaaatcaagattatttgtgaaaagataatgaaaataaagcgtacctacagcgaactttgtc |
40855210 |
T |
|
| Q |
101 |
aaaccaggcagatctaccagtgttaagttgacaactatcaacaaatataaaaatagttagaacaacaacaacaacattaattagatgcagactgtaatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
40855209 |
aaaccaggcagatctaccagtgttaagttgacaactatcaacaaatataaaaatagttagaacaacaacaacaacattaattagatacggactgtaatca |
40855110 |
T |
|
| Q |
201 |
ttacaccacaggt |
213 |
Q |
| |
|
||||||||||||| |
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|
| T |
40855109 |
ttacaccacaggt |
40855097 |
T |
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