View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12120_low_5 (Length: 385)

Name: NF12120_low_5
Description: NF12120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12120_low_5
NF12120_low_5
[»] chr3 (15 HSPs)
chr3 (30-202)||(23449020-23449192)
chr3 (30-202)||(23500783-23500955)
chr3 (32-202)||(23353652-23353822)
chr3 (30-202)||(23435221-23435390)
chr3 (25-202)||(23388134-23388311)
chr3 (33-202)||(23406502-23406671)
chr3 (29-202)||(23441629-23441802)
chr3 (29-202)||(23474161-23474334)
chr3 (28-203)||(23455782-23455957)
chr3 (30-202)||(23465153-23465325)
chr3 (38-202)||(23480518-23480682)
chr3 (28-191)||(36017117-36017280)
chr3 (28-191)||(36034023-36034186)
chr3 (29-98)||(21088315-21088384)
chr3 (28-126)||(36025215-36025313)
[»] scaffold0201 (1 HSPs)
scaffold0201 (30-202)||(13327-13499)
[»] scaffold0570 (2 HSPs)
scaffold0570 (30-202)||(9841-10013)
scaffold0570 (86-121)||(3498-3533)
[»] scaffold0200 (1 HSPs)
scaffold0200 (288-371)||(29111-29194)
[»] chr8 (2 HSPs)
chr8 (288-371)||(44312839-44312922)
chr8 (288-371)||(44316644-44316727)
[»] chr6 (2 HSPs)
chr6 (288-371)||(34096344-34096427)
chr6 (288-371)||(34099977-34100060)
[»] chr2 (1 HSPs)
chr2 (288-371)||(21611137-21611220)
[»] chr1 (1 HSPs)
chr1 (289-370)||(12142585-12142667)


Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 23449020 - 23449192
Alignment:
Q  30 ttacctataattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctgcaacttgtcattattatgcttcaaatctcga 129  Q
    ||||||||||||| || ||||||||||||| ||| ||||||| ||||||||||  ||||||||||||| ||||||||||||||| |||||||||||| |     
T  23449020 ttacctataatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatcttgc 23449119  T
Q  130 ttatattttggaaatgcctgcttgtaactaccagtcggcttcctcacatgtgagggatctatgttgtaaaaaa 202  Q
    |||| ||||| ||| || ||||||||||| || ||| |||||||||||||||| |||||||||||||||||||    
T  23449120 ttatgttttgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgttgtaaaaaa 23449192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 23500783 - 23500955
Alignment:
Q  30 ttacctataattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctgcaacttgtcattattatgcttcaaatctcga 129  Q
    |||||| |||||| || ||||||||||||| ||| ||||||| ||||||||||  ||||||||||||| ||||||||||||||| ||||||||||||||     
T  23500783 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgc 23500882  T
Q  130 ttatattttggaaatgcctgcttgtaactaccagtcggcttcctcacatgtgagggatctatgttgtaaaaaa 202  Q
    |||| ||||| ||| || ||||||||||| || ||| |||||||||||||||| |||||||||||||||||||    
T  23500883 ttatgttttgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgttgtaaaaaa 23500955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 23353652 - 23353822
Alignment:
Q  32 acctataattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctgcaacttgtcattattatgcttcaaatctcgatt 131  Q
    ||||||||||| || ||||||||||||||||| ||||||| ||||||||||   |||||||||||| ||||||||||||||| |||||||||||||| ||    
T  23353652 acctataatttcgagagtcccaaccaactaaattagctgcctcggtgagagcagctttccatttctccaacttgtcattattgtgcttcaaatctcgctt 23353751  T
Q  132 atattttggaaatgcctgcttgtaactaccagtcggcttcctcacatgtgagggatctatgttgtaaaaaa 202  Q
    || ||||  ||| || ||||||||||| || ||| |||||||||||||||| |||||||||||||||||||    
T  23353752 atgtttttcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgttgtaaaaaa 23353822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 23435221 - 23435390
Alignment:
Q  30 ttacctataattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctgcaacttgtcattattatgcttcaaatctcga 129  Q
    |||||||||||||||| ||||||||||||||||| ||||||| || ||||||| | |||||||||| ||||||||||||||||| ||||||||||||||     
T  23435221 ttacctataattttgagagtcccaaccaactaaattagctgcctcagtgagagcggctttccatttatgcaacttgtcattattgtgcttcaaatctcgc 23435320  T
Q  130 ttatattttggaaatgcctgcttgtaactaccagtcggcttcctcacatgtgagggatctatgttgtaaaaaa 202  Q
    |||| ||||| |||||| ||||||||||| || ||| |||||||||||||||| |||   |||||||||||||    
T  23435321 ttatgttttgcaaatgcttgcttgtaactcccggtctgcttcctcacatgtgatgga---atgttgtaaaaaa 23435390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 23388134 - 23388311
Alignment:
Q  25 ttaatttacctataattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctgcaacttgtcattattatgcttcaaat 124  Q
    |||| |||||| ||||| ||||||||||||||||||||||||||||| ||||  |||| | ||||||||| ||| ||||||||||||||  |||||||||    
T  23388134 ttaacttacctgtaattctgaaagtcccaaccaactaaactagctgcctcggcaagagcggctttccattcctgtaacttgtcattattgagcttcaaat 23388233  T
Q  125 ctcgattatattttggaaatgcctgcttgtaactaccagtcggcttcctcacatgtgagggatctatgttgtaaaaaa 202  Q
    ||||  ||| |||||  || || |||| |||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  23388234 ctcgcatatgttttgtgaaggcttgctcgtaactcccagtctgcttcctcacatgtgagggatctatgttgtaaaaaa 23388311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 33 - 202
Target Start/End: Original strand, 23406502 - 23406671
Alignment:
Q  33 cctataattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctgcaacttgtcattattatgcttcaaatctcgatta 132  Q
    ||||||||||||| ||||||||||||| ||| ||||||| || |||||||  ||||||||||||| ||||||||||||||| ||||| |||||||| |||    
T  23406502 cctataattttgagagtcccaaccaaccaaattagctgcctcagtgagagaatctttccatttcttcaacttgtcattattgtgctttaaatctcgctta 23406601  T
Q  133 tattttggaaatgcctgcttgtaactaccagtcggcttcctcacatgtgagggatctatgttgtaaaaaa 202  Q
    | ||||| ||| || ||||||||||| || ||| |||||||||||| ||| |||||||||||||||||||    
T  23406602 tgttttgcaaaggcttgcttgtaactcccggtctgcttcctcacatttgatggatctatgttgtaaaaaa 23406671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 23441629 - 23441802
Alignment:
Q  29 tttacctataattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctgcaacttgtcattattatgcttcaaatctcg 128  Q
    ||||||| ||||||||| ||||||||||||||||||||||||| || ||||| |  |||||||||| ||| ||||||||||||||   ||||||||||||    
T  23441629 tttacctgtaattttgagagtcccaaccaactaaactagctgcctcagtgagtgcatctttccattcctgtaacttgtcattattgctcttcaaatctcg 23441728  T
Q  129 attatattttggaaatgcctgcttgtaactaccagtcggcttcctcacatgtgagggatctatgttgtaaaaaa 202  Q
     |||| |||||  || || ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||    
T  23441729 cttatgttttgcgaaggcttgcttgtaactcccagtctgcttcctcacatgtgatggatctatgttgtaaaaaa 23441802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 23474161 - 23474334
Alignment:
Q  29 tttacctataattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctgcaacttgtcattattatgcttcaaatctcg 128  Q
    ||||||| ||||||||| ||||||||||||||||||||||||| || ||||| |  |||||||||| ||| ||||||||||||||   ||||||||||||    
T  23474161 tttacctgtaattttgagagtcccaaccaactaaactagctgcctcagtgagtgcatctttccattcctgtaacttgtcattattgctcttcaaatctcg 23474260  T
Q  129 attatattttggaaatgcctgcttgtaactaccagtcggcttcctcacatgtgagggatctatgttgtaaaaaa 202  Q
     |||| |||||  || || ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||    
T  23474261 cttatgttttgcgaaggcttgcttgtaactcccagtctgcttcctcacatgtgatggatctatgttgtaaaaaa 23474334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 23455782 - 23455957
Alignment:
Q  28 atttacctataattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctgcaacttgtcattattatgcttcaaatctc 127  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||| || ||||||| | |||||||||||| ||||||| ||||||| ||||||||||||     
T  23455782 atttacctataattttgagagtcccatccaactaaattagctgcctcagtgagagaggctttccatttctccaacttggcattattgtgcttcaaatctt 23455881  T
Q  128 gattatattttggaaatgcctgcttgtaactaccagtcggcttcctcacatgtgagggatctatgttgtaaaaaat 203  Q
    | |||| ||||| ||| || ||||||||||| || ||  |||||||||||||||| ||||| ||||||||||||||    
T  23455882 gcttatgttttgcaaaggcttgcttgtaactcccggtttgcttcctcacatgtgatggatcaatgttgtaaaaaat 23455957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 23465153 - 23465325
Alignment:
Q  30 ttacctataattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctgcaacttgtcattattatgcttcaaatctcga 129  Q
    ||||||||||||| || ||||||||||||||||| ||||||| || |||||||   |||||||||||| |||||| || ||||| |||||||||| |||     
T  23465153 ttacctataatttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaacttatcgttattgtgcttcaaatttcgc 23465252  T
Q  130 ttatattttggaaatgcctgcttgtaactaccagtcggcttcctcacatgtgagggatctatgttgtaaaaaa 202  Q
    |||| ||||| ||| || ||||||||||| || ||| |||||||||||||||| |||||||||||||||||||    
T  23465253 ttatgttttgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgttgtaaaaaa 23465325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 38 - 202
Target Start/End: Original strand, 23480518 - 23480682
Alignment:
Q  38 aattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctgcaacttgtcattattatgcttcaaatctcgattatattt 137  Q
    |||||||||||||||||||  ||||||||||||| || ||||||| | ||||||||| ||| ||||||||||||||   |||||||||||| |||| |||    
T  23480518 aattttgaaagtcccaaccgcctaaactagctgcctcagtgagagcggctttccattcctgtaacttgtcattattgctcttcaaatctcgcttatgttt 23480617  T
Q  138 tggaaatgcctgcttgtaactaccagtcggcttcctcacatgtgagggatctatgttgtaaaaaa 202  Q
    || ||| || |||| |||||| || ||| | |||||||||||||| |||||||| ||||||||||    
T  23480618 tgcaaaagcttgctcgtaactcccggtctggttcctcacatgtgatggatctattttgtaaaaaa 23480682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 36017117 - 36017280
Alignment:
Q  28 atttacctataattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctgcaacttgtcattattatgcttcaaatctc 127  Q
    ||||||||  |||||||| ||| ||| |||  |||| | |||||||| |||||||  |||||| |||||||||||||||| || || |||||||||| |     
T  36017117 atttaccttgaattttgatagtgccacccagataaagtggctgcttcagtgagagcatctttctatttctgcaacttgtctttgttgtgcttcaaatttt 36017216  T
Q  128 gattatattttggaaatgcctgcttgtaactaccagtcggcttcctcacatgtgagggatctat 191  Q
    | ||||  |||| ||| || ||||||||||| ||| |  | |||||||||||||| ||||||||    
T  36017217 gcttattctttgcaaaggcttgcttgtaactcccaatttgattcctcacatgtgatggatctat 36017280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 36034023 - 36034186
Alignment:
Q  28 atttacctataattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctgcaacttgtcattattatgcttcaaatctc 127  Q
    ||||||||  |||||||| ||| ||| |||  |||| | |||||||| |||||||  |||||| |||||||||||||||| || || |||||||||| |     
T  36034023 atttaccttgaattttgatagtgccacccagataaagtggctgcttcagtgagagcatctttctatttctgcaacttgtctttgttgtgcttcaaatttt 36034122  T
Q  128 gattatattttggaaatgcctgcttgtaactaccagtcggcttcctcacatgtgagggatctat 191  Q
    | ||||  |||| ||| || ||||||||||| ||| |  | |||||||||||||| ||||||||    
T  36034123 gcttatgctttgcaaaggcttgcttgtaactcccaatttgattcctcacatgtgatggatctat 36034186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 21088315 - 21088384
Alignment:
Q  29 tttacctataattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctg 98  Q
    |||||||| |||||||| ||| ||||||| ||||||||||||| ||  |||||| |||||||||||||||    
T  21088315 tttacctacaattttgagagttccaaccatctaaactagctgcgtcaatgagagcgtctttccatttctg 21088384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 36025215 - 36025313
Alignment:
Q  28 atttacctataattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctgcaacttgtcattattatgcttcaaatct 126  Q
    |||||| | ||||||||| ||| ||| ||| ||||| | || |||||||||||||  ||||||||||| ||||| ||||| ||  | ||||||||||||    
T  36025215 atttacttgtaattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatct 36025313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 13327 - 13499
Alignment:
Q  30 ttacctataattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctgcaacttgtcattattatgcttcaaatctcga 129  Q
    ||||||||||||| || ||||||||||||||||| ||||||| || |||||||   |||||||||||| |||||| || ||||| ||||||||||||||     
T  13327 ttacctataatttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaacttatcgttattgtgcttcaaatctcgc 13426  T
Q  130 ttatattttggaaatgcctgcttgtaactaccagtcggcttcctcacatgtgagggatctatgttgtaaaaaa 202  Q
    |||| ||||| ||| || |||| |||||| |||||| |||||||||||| ||  |||||||||||||||||||    
T  13427 ttatgttttgcaaaggcttgctggtaacttccagtctgcttcctcacatttgctggatctatgttgtaaaaaa 13499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 10013 - 9841
Alignment:
Q  30 ttacctataattttgaaagtcccaaccaactaaactagctgcttcggtgagagtgtctttccatttctgcaacttgtcattattatgcttcaaatctcga 129  Q
    ||||||||||||| || ||||||||||||||||| ||||||| |||||||||| | ||||||| |||| |||||||||||||||   ||||||||||||     
T  10013 ttacctataatttcgagagtcccaaccaactaaattagctgcctcggtgagagcggctttccagttcttcaacttgtcattattgctcttcaaatctcgc 9914  T
Q  130 ttatattttggaaatgcctgcttgtaactaccagtcggcttcctcacatgtgagggatctatgttgtaaaaaa 202  Q
    |||| ||||  ||| || |||| |||||| |||||| |||| ||||||| ||  ||||||| |||||||||||    
T  9913 ttatgtttttcaaaggcttgctcgtaacttccagtctgctttctcacatttgctggatctaagttgtaaaaaa 9841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 3533 - 3498
Alignment:
Q  86 ctttccatttctgcaacttgtcattattatgcttca 121  Q
    |||||||||||||||||||||||||||| |||||||    
T  3533 ctttccatttctgcaacttgtcattattgtgcttca 3498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 288 - 371
Target Start/End: Original strand, 29111 - 29194
Alignment:
Q  288 cttgttgacttattcctaagaaactgatttggcataatatcatgttgccatgatttgtggaacttccttttcaattactttgca 371  Q
    |||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29111 cttgttgacttattcctaagaagctgatttggcagaatatcaggttgccatgatttgtggaacttccttttcaattactttgca 29194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 288 - 371
Target Start/End: Original strand, 44312839 - 44312922
Alignment:
Q  288 cttgttgacttattcctaagaaactgatttggcataatatcatgttgccatgatttgtggaacttccttttcaattactttgca 371  Q
    |||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44312839 cttgttgacttattcctaagaagctgatttggcagaatatcacgttgccatgatttgtggaacttccttttcaattactttgca 44312922  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 288 - 371
Target Start/End: Original strand, 44316644 - 44316727
Alignment:
Q  288 cttgttgacttattcctaagaaactgatttggcataatatcatgttgccatgatttgtggaacttccttttcaattactttgca 371  Q
    |||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44316644 cttgttgacttattcctaagaagctgatttggcagaatatcacgttgccatgatttgtggaacttccttttcaattactttgca 44316727  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 288 - 371
Target Start/End: Complemental strand, 34096427 - 34096344
Alignment:
Q  288 cttgttgacttattcctaagaaactgatttggcataatatcatgttgccatgatttgtggaacttccttttcaattactttgca 371  Q
    |||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34096427 cttgttgacttattcctaagaagctgatttggcagaatatcacgttgccatgatttgtggaacttccttttcaattactttgca 34096344  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 288 - 371
Target Start/End: Complemental strand, 34100060 - 34099977
Alignment:
Q  288 cttgttgacttattcctaagaaactgatttggcataatatcatgttgccatgatttgtggaacttccttttcaattactttgca 371  Q
    ||||||||||||||||||||||  |||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  34100060 cttgttgacttattcctaagaagatgatttggcagaatatcaagttgccataatttgtggaacttccttttcaattactttgca 34099977  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 288 - 371
Target Start/End: Complemental strand, 21611220 - 21611137
Alignment:
Q  288 cttgttgacttattcctaagaaactgatttggcataatatcatgttgccatgatttgtggaacttccttttcaattactttgca 371  Q
    ||||||||||||||||||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21611220 cttgttgacttattcctaagaagttgatttggcagaatatcaggttgccatgatttgtggaacttccttttcaattactttgca 21611137  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 370
Target Start/End: Complemental strand, 12142667 - 12142585
Alignment:
Q  289 ttgttgacttattcctaagaaactgatttggcataatatcatgttgccatga-tttgtggaacttccttttcaattactttgc 370  Q
    |||||||||||||| |||||| || |||||||| ||||| | |||||||||| ||| |||||||| | |||||||||||||||    
T  12142667 ttgttgacttattcataagaagctcatttggcagaatattacgttgccatgattttttggaacttacatttcaattactttgc 12142585  T

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