View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12120_low_7 (Length: 314)
Name: NF12120_low_7
Description: NF12120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12120_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 40855445 - 40855741
Alignment:
| Q |
1 |
ctgatgtgatggccttccaaagcaatttccagccctatgttgaagaaatcatattggaggatgatattaacaagttcactgcctttatttctatcagttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40855445 |
ctgatgtgatggccttccaaagcaatttccagccctatgttgaagaaatcatattggaggatgatattaacaagttcactgcctttatttctatcagttc |
40855544 |
T |
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| Q |
101 |
agtagtactagcaagtgatgacaggcaatagttggtcacattcttaatcccaaatatggggctttttaaccttttccattctgacataatgctattgaat |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40855545 |
agtagtactagcaagtgatgacaggcattagttggtcacattcttaatcccaaatatggggctttttaaccttttccattctgacataatgctattgaat |
40855644 |
T |
|
| Q |
201 |
gtgtgtccaagtaataataatttgaaatttttagtttgtatgtgtggccacacttttaatccttttattcatctattcctaatttgttttctttgat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40855645 |
gtgtgtccaagtaataataatttgaaatttttagtttgtacgtgtggccacacttttaatccttttattcatctattcctaatttgttttctttgat |
40855741 |
T |
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