View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12120_low_9 (Length: 272)
Name: NF12120_low_9
Description: NF12120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12120_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 32255013 - 32254767
Alignment:
| Q |
17 |
gaagtactgatatgtaaagaatggacgcagagtgcatggggaccattccatattgccatgtctgatttatttaaactgcagtcaggataccaacaaagtg |
116 |
Q |
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| T |
32255013 |
gaagtactgatatgtaaagaatggacgcagagtgcatggggaccattccatattgccatgtctgatttatttaaactgcattcaggataccaacaaagtg |
32254914 |
T |
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| Q |
117 |
gatatatataataatgtgatgtgtaggaaattaagaattcataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtccc |
216 |
Q |
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| T |
32254913 |
gatatatataataatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtcatgaacttagcaacctacactgtgtgacgtgtccc |
32254814 |
T |
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| Q |
217 |
ttcctcactcttctcttcttactataaatcaccactccacaggttct |
263 |
Q |
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|| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32254813 |
tttctcacgcttctcttcttactataaatcaccactccacaggttct |
32254767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 128 - 263
Target Start/End: Complemental strand, 32244372 - 32244238
Alignment:
| Q |
128 |
taatgtgatgtgtaggaaattaagaattcataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttcctcactct |
227 |
Q |
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| T |
32244372 |
taatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtcatgaact-agcaacctacactgtgtgacgtgtcccttcctcactct |
32244274 |
T |
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| Q |
228 |
tctcttcttactataaatcaccactccacaggttct |
263 |
Q |
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| T |
32244273 |
tctcttcttactataaatcaccactccacaggttct |
32244238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 118 - 263
Target Start/End: Complemental strand, 32250091 - 32249947
Alignment:
| Q |
118 |
atatatataataatgtgatgtgtaggaaattaagaattcataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtccct |
217 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32250091 |
atatctatcataatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtcatgaact-agcaacctacactgtgtgacgtgtccct |
32249993 |
T |
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| Q |
218 |
tcctcactcttctcttcttactataaatcaccactccacaggttct |
263 |
Q |
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| T |
32249992 |
ttctcacgcttctcttcttactataaatcaccactccacaggttct |
32249947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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