View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12121_high_6 (Length: 512)
Name: NF12121_high_6
Description: NF12121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12121_high_6 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 86 - 493
Target Start/End: Original strand, 41572399 - 41572807
Alignment:
| Q |
86 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacaggataccccagcctcaaacttgtttactgctaaaaccgct |
185 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41572399 |
taataaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacagcataccccagcctcaaacttgtttactgctaaaaccgct |
41572498 |
T |
|
| Q |
186 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgccggcaccttcaaacggcaaagaatacatctcct |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41572499 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgccggcaccttcaaacggctaagaatacatctcca |
41572598 |
T |
|
| Q |
286 |
cgatataaccttcacagcctccaccgtaccctccacc-gacaaaccacatttttgaaaattcgatcatttctcaccctcaataaattccacactacggcg |
384 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41572599 |
cgatataaccttcacagcctccaccgtaccctccacctgacaaaccacatttttgaaaattcgatcatttctcaccctcaataaattccacactacggca |
41572698 |
T |
|
| Q |
385 |
tgccaaatcaaacggaatcccttacggatcttgttactccctgctgccacattccattccttccacagcagaaacatgttaaccggaagctccatagcca |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41572699 |
tgccaaatcaaacggaatcccttacggatcttgttactccctgctgccacattccattcctcccacagcagaaacatgttaaccggaagctccatagcca |
41572798 |
T |
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| Q |
485 |
cctcaacac |
493 |
Q |
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||||||||| |
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| T |
41572799 |
cctcaacac |
41572807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 86 - 478
Target Start/End: Complemental strand, 27754102 - 27753710
Alignment:
| Q |
86 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacaggataccccagcctcaaacttgtttactgctaaaaccgct |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
27754102 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacgggtcaccgcaatataaacagcataccccagcctcaaacttgtt-actgctaaaaccgct |
27754004 |
T |
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| Q |
186 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgccggcaccttcaaacggcaaagaatacatctcct |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
27754003 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaacttcactcgtagaacaaacacgccggcaccttcaaacggctaagaaaccatctcca |
27753904 |
T |
|
| Q |
286 |
cgatataaccttcacagcctccaccgtaccctcca-ccgacaaaccacatttttgaaaattcgatcatttctcaccctcaataaattccacactacggcg |
384 |
Q |
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||| |||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
27753903 |
cgacataaccttcacagcctccaccgtatcctccacccgataaaccgcatttttgaaaattcggtcatttctcaccctccataaattccacactacggcg |
27753804 |
T |
|
| Q |
385 |
tgccaaatcaaacggaatcccttacggatcttgttactccctgctgccacattccattccttccacagcagaaacatgttaaccggaagctcca |
478 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| || | ||||||||||| |
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| T |
27753803 |
tgccaaatcaaccggaatcccttacggatcttattactccctgctgccacattccaatcctcccacagcagaaacaaattgatcggaagctcca |
27753710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 10909508 - 10909566
Alignment:
| Q |
337 |
ttgaaaattcgatcatttctcaccctcaataaattccacactacggcgtgccaaatcaa |
395 |
Q |
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||||||||||||||||||||||||||| ||||| |||| || |||||||||||||||| |
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| T |
10909508 |
ttgaaaattcgatcatttctcaccctccataaactccaaaccgcggcgtgccaaatcaa |
10909566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 87 - 480
Target Start/End: Original strand, 21941917 - 21942311
Alignment:
| Q |
87 |
aatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatata-cacaggataccccagcctcaaacttgtttactgctaaaaccgct |
185 |
Q |
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|||||||||||||||| | | ||||||||| |||||||| ||||||||||| || ||| | ||||||||||||||| ||||| |||| ||||| || |
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| T |
21941917 |
aatgaggctgccatataccatcctgcacaaa-ccagcacatgtcaccgcaatttaacacggcataccccagcctcaatcttgtag-ctgcgaaaactgca |
21942014 |
T |
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| Q |
186 |
gaacacctcctca-ttaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgccggcaccttcaaacggca-aagaatacatctc |
283 |
Q |
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|| | | | || |||| ||||||| || |||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||| ||||| |||||| |
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| T |
21942015 |
gagaaacccgtccgttactgtaagagacatgcttttggattccaacaccactcgtagaacaaacacgtcggcatctttaaacggctcaagaac-catctc |
21942113 |
T |
|
| Q |
284 |
ctcgatataaccttcacagcctccaccgtaccctccaccg-acaaaccacatttttgaaaattcgatcatttctcaccctcaataaattccacactacgg |
382 |
Q |
| |
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| ||| || |||||||| |||||||||||| ||| |||| |||||| ||||||||||||| ||||||||||||||||| | | ||| ||||| |||| |
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| T |
21942114 |
cacgacattaccttcactgcctccaccgtatccttcaccccacaaactgcatttttgaaaataagatcatttctcaccctccaaagatttcacacgacgg |
21942213 |
T |
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| Q |
383 |
cgtgccaaatcaaacggaatcccttacggatcttgttactccctgctgccacattccattccttccacagcagaaacatgttaaccggaagctccata |
480 |
Q |
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| T |
21942214 |
catgccaaaccaaccggaagcccttgcgaatcccattattacccgctgccacattccagacctcccacagcacaaacaaatttaacagaagctccata |
21942311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 395
Target Start/End: Complemental strand, 13725921 - 13725863
Alignment:
| Q |
337 |
ttgaaaattcgatcatttctcaccctcaataaattccacactacggcgtgccaaatcaa |
395 |
Q |
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||||||||||||||||||||| ||||| ||||| |||| || |||||||||||||||| |
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| T |
13725921 |
ttgaaaattcgatcatttctcgccctccataaactccaaaccgcggcgtgccaaatcaa |
13725863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 26728864 - 26728806
Alignment:
| Q |
340 |
aaaattcgatcatttctcaccctcaataaattccacactacggcgtgccaaatcaaacg |
398 |
Q |
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|||||||| ||||||||| ||||| ||| | ||||||| ||||| |||||||||||||| |
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| T |
26728864 |
aaaattcgctcatttctcgccctccatatactccacaccacggcatgccaaatcaaacg |
26728806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 138728 - 138683
Alignment:
| Q |
219 |
ttggattccaactccactcgtagaacaaacacgccggcaccttcaa |
264 |
Q |
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| T |
138728 |
ttgggttccaactccactcgtaaaacaaacaagccggcacgttcaa |
138683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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