View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12121_low_10 (Length: 295)
Name: NF12121_low_10
Description: NF12121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12121_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 32750131 - 32750284
Alignment:
| Q |
17 |
acaaaatgaggttgctaagagaaaacattagcacttgtttgatcaaactcaaactatattattccaaaataaggttctcgaaaaagcttaggaaggcagt |
116 |
Q |
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| T |
32750131 |
acaaaatgaggttgctaagagaaaaaatgggcacttgtttgatcaaactcaaactatattatttcaaaataaggttctcgaaaaagcttaggaaggcagt |
32750230 |
T |
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| Q |
117 |
tttagctgcatcttatctcataaatcatttgccttctagtgtcttaattccaaa |
170 |
Q |
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| T |
32750231 |
tttagctgcatcttatctcataaatcatttgccttctagtgtcttaattccaaa |
32750284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 50058777 - 50058921
Alignment:
| Q |
17 |
acaaaatgaggttgctaagagaaaacattagcacttgtttgatcaaactcaaactatattattccaaaataaggttctcgaaaaagctt--aggaaggca |
114 |
Q |
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| T |
50058777 |
acaaaatggggttgctgagagaaaaaatgggcatttgttagatcaaactcgagctatgttattccaaaataaggttcctaagaaattttggggggaggca |
50058876 |
T |
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| Q |
115 |
gttttagctgcatcttatctcataaatcatttgccttctagtgtc |
159 |
Q |
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| T |
50058877 |
gttttaacagcatcttacctcataaaccgtttaccttctagtgtc |
50058921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 28094659 - 28094515
Alignment:
| Q |
17 |
acaaaatgaggttgctaagagaaaacattagcacttgtttgatcaaactcaaactatattattccaaaataaggttctcgaaaaagctt--aggaaggca |
114 |
Q |
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| T |
28094659 |
acaaaatggggttgctgagagaaaaaatggccatttgttagatcaaactcaagctatgttatttcaaaataaggttcctaagagattttggggggaggcg |
28094560 |
T |
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| Q |
115 |
gttttagctgcatcttatctcataaatcatttgccttctagtgtc |
159 |
Q |
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| T |
28094559 |
gttttaattgcatcttatctcataaatcgtttaccttctagtgtc |
28094515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 31972615 - 31972658
Alignment:
| Q |
116 |
ttttagctgcatcttatctcataaatcatttgccttctagtgtc |
159 |
Q |
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| T |
31972615 |
ttttagctgcatcttatctcataaatcgtttaccttctaatgtc |
31972658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 29442408 - 29442362
Alignment:
| Q |
115 |
gttttagctgcatcttatctcataaatcatttgccttctagtgtctt |
161 |
Q |
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| T |
29442408 |
gttttaactgcatcttatctcataaatcgtttaccttctattgtctt |
29442362 |
T |
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