View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12121_low_12 (Length: 266)
Name: NF12121_low_12
Description: NF12121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12121_low_12 |
 | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0370 (1 HSPs) |
| | |
|
| [»] scaffold0340 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 6928604 - 6928365
Alignment:
| Q |
15 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6928604 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaata |
6928505 |
T |
|
| Q |
115 |
acccaatattggttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgact |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6928504 |
acccaatattggttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgact |
6928405 |
T |
|
| Q |
215 |
atcatgaggtcttttcttgtagctggcacattcacaggtt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6928404 |
atcatgaggtcttttcttgtagctggcacattcataggtt |
6928365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 503850 - 503611
Alignment:
| Q |
15 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
503850 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaata |
503751 |
T |
|
| Q |
115 |
acccaatattggttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgact |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
503750 |
acccaatattggttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgact |
503651 |
T |
|
| Q |
215 |
atcatgaggtcttttcttgtagctggcacattcacaggtt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
503650 |
atcatgaggtcttttcttgtagctggcacattcataggtt |
503611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 48721361 - 48721558
Alignment:
| Q |
15 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48721361 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgtttgatttttcgcaattttttccatacctctgtgtaaata |
48721460 |
T |
|
| Q |
115 |
acccaatattggttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48721461 |
acccaatattggttcacaatcaataacatcttcaccatccagagtaacaataagtcgaagaacaccatgcattgatgggtattgaggccccatattga |
48721558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 52457361 - 52457465
Alignment:
| Q |
15 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaata |
114 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52457361 |
ctgtgaatatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaata |
52457460 |
T |
|
| Q |
115 |
accca |
119 |
Q |
| |
|
||||| |
|
|
| T |
52457461 |
accca |
52457465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 22838026 - 22838265
Alignment:
| Q |
15 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22838026 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaata |
22838125 |
T |
|
| Q |
115 |
acccaatattggttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgact |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22838126 |
acccaatattggttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgact |
22838225 |
T |
|
| Q |
215 |
atcatgaggtcttttcttgtagctggcacattcacaggtt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22838226 |
atcatgaggtcttttcttgtagctggcacattcataggtt |
22838265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 14540347 - 14540108
Alignment:
| Q |
15 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14540347 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaata |
14540248 |
T |
|
| Q |
115 |
acccaatattggttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgact |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14540247 |
acccaatattggttcacaatcaataacatcttcaccatccagattaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgact |
14540148 |
T |
|
| Q |
215 |
atcatgaggtcttttcttgtagctggcacattcacaggtt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14540147 |
atcatgaggtcttttcttgtagctggcacattcataggtt |
14540108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 52748 - 52959
Alignment:
| Q |
15 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaata |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
52748 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccacaattttttccatacctctgtcaaaata |
52847 |
T |
|
| Q |
115 |
acccaatattggttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgact |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
52848 |
acccaatattggttcacaat----------------------agtaacaataagtcgaagaacaccattcatcgatgggtgttgaggccccatattgact |
52925 |
T |
|
| Q |
215 |
atcatgaggtcttttcttgtagctggcacattca |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
52926 |
atcatgaggtcttttcttgtagctggcacattca |
52959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 20373586 - 20373797
Alignment:
| Q |
15 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaata |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
20373586 |
ctgtgaacatagtagctaaataatcccaacgtgtttcataaggcagatattgtataattgttcgattttccacaattttttccatacctctgtcaaaata |
20373685 |
T |
|
| Q |
115 |
acccaatattggttcacaatcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgact |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
20373686 |
acccaatattggttcacaat----------------------agtaacaataagtcgaagaacaccattcatcgatgggtgttgaggccccatattgact |
20373763 |
T |
|
| Q |
215 |
atcatgaggtcttttcttgtagctggcacattca |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
20373764 |
atcatgaggtcttttcttgtagctggcacattca |
20373797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 13591375 - 13591444
Alignment:
| Q |
15 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttcc |
85 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
13591375 |
ctgtgaacatagtagctaaataatcc-aacgtgttatataaggtagatattgtataattgttcgattttcc |
13591444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 178773 - 178974
Alignment:
| Q |
34 |
ataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattggttcacaa |
133 |
Q |
| |
|
||||||||| | |||||||||||| | ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| || ||||| ||||||||| |
|
|
| T |
178773 |
ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgattttttccattcctctgtgtaaataccctaatatgggttcacaa |
178872 |
T |
|
| Q |
134 |
tcaataacatcttcaccatccagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgactatcatgaggtcttttcttg |
233 |
Q |
| |
|
||||||||||| |||||||| |||||||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| |
|
|
| T |
178873 |
tcaataacatcctcaccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgactatcatgagatctttttttg |
178972 |
T |
|
| Q |
234 |
ta |
235 |
Q |
| |
|
|| |
|
|
| T |
178973 |
ta |
178974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 165508 - 165451
Alignment:
| Q |
15 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataat |
72 |
Q |
| |
|
|||| ||||||||||||||||||||||| | |||||||||||| | ||||||||||| |
|
|
| T |
165508 |
ctgtaaacatagtagctaaataatcccaccttgttacataaggtaagtattgtataat |
165451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 1 - 97
Alignment:
| Q |
47 |
gttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattggttcacaatcaataacat |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1 |
gttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaataacccaatattggttcacaatcaataacat |
97 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 23765156 - 23765050
Alignment:
| Q |
15 |
ctgtgaacatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaattttttccatacctctgtgtaaata |
114 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| | |
|
|
| T |
23765156 |
ctgtgaatatagtagctaaataatcccaacgtgttacataaggcagatattgtataattgttcgatttttcgcaattttttccatatctttgtgtaaaca |
23765057 |
T |
|
| Q |
115 |
acccaat |
121 |
Q |
| |
|
||||||| |
|
|
| T |
23765056 |
acccaat |
23765050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 14176 - 14224
Alignment:
| Q |
24 |
tagtagctaaataatcccaacgtgttacataaggcagatattgtataat |
72 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14176 |
tagtagctaaataatcccaatgtgttacataaggcagatattgtataat |
14224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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