View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12121_low_13 (Length: 259)

Name: NF12121_low_13
Description: NF12121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12121_low_13
NF12121_low_13
[»] chr3 (4 HSPs)
chr3 (19-253)||(26283357-26283591)
chr3 (88-148)||(2133603-2133664)
chr3 (95-148)||(35420499-35420552)
chr3 (95-123)||(22328-22356)
[»] chr4 (3 HSPs)
chr4 (97-152)||(50471753-50471809)
chr4 (95-148)||(25575054-25575108)
chr4 (97-150)||(49738550-49738604)
[»] chr2 (2 HSPs)
chr2 (95-149)||(33393338-33393393)
chr2 (95-123)||(42549835-42549863)
[»] scaffold0570 (1 HSPs)
scaffold0570 (95-148)||(946-1000)
[»] chr8 (4 HSPs)
chr8 (95-148)||(32276915-32276969)
chr8 (95-123)||(8255529-8255557)
chr8 (95-123)||(16921475-16921503)
chr8 (95-123)||(36447923-36447951)
[»] chr7 (1 HSPs)
chr7 (95-148)||(5418304-5418358)
[»] chr5 (2 HSPs)
chr5 (96-148)||(2090643-2090696)
chr5 (95-123)||(36806722-36806750)
[»] chr6 (1 HSPs)
chr6 (95-123)||(579674-579702)
[»] chr1 (2 HSPs)
chr1 (95-123)||(21519180-21519208)
chr1 (97-152)||(50806893-50806949)


Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 26283357 - 26283591
Alignment:
Q  19 ccttggacactaattaagatgcacacgcaatgccaaataaagaatacaaaatgaaaaacctatttttgttttgtttcaacaacaacaaccaagctttatc 118  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26283357 ccttggacactaattaagatgcacgagcaatgctaaataaagaatacaaaatgaaaaacctatttttgttttgtttcaacaacaacaaccaagctttatc 26283456  T
Q  119 ccactctatggggtcgttacatggatcaaacaaccaagccnnnnnnngttttgttt-aagggtgattatatttaaacatcttaatttctcaccatacatt 217  Q
      ||||  || ||||| ||||| |||||||||||||||||       ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||    
T  26283457 ttactcagtgaggtcgctacat-gatcaaacaaccaagcctttttttgttttgtttcaagggtgattatatttagacattttaatttctcaccatacatt 26283555  T
Q  218 ttaacatctcaatttctttatccgtcttcatctcac 253  Q
    ||||||||||| ||||||||||||||||||| ||||    
T  26283556 ttaacatctcattttctttatccgtcttcatgtcac 26283591  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 2133603 - 2133664
Alignment:
Q  88 tttgtttcaacaacaacaaccaagctttatcccactctatggggtcg-ttacatggatcaaa 148  Q
    |||||| |||||||||||||||||| ||||||||||   ||||||||  |||||||||||||    
T  2133603 tttgttacaacaacaacaaccaagccttatcccactaagtggggtcgagtacatggatcaaa 2133664  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 35420552 - 35420499
Alignment:
Q  95 caacaacaacaaccaagctttatcccactctatggggtcgttacatggatcaaa 148  Q
    |||||| ||||||||||| ||||||||||  ||||||||| |||||||| ||||    
T  35420552 caacaataacaaccaagccttatcccactaaatggggtcgctacatggaccaaa 35420499  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 22356 - 22328
Alignment:
Q  95 caacaacaacaaccaagctttatcccact 123  Q
    |||||||||||||||||||||||||||||    
T  22356 caacaacaacaaccaagctttatcccact 22328  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 50471809 - 50471753
Alignment:
Q  97 acaacaacaaccaagctttatcccactctatggggtcg-ttacatggatcaaacaac 152  Q
    |||||||||||||||| ||||||||||   |||||||| ||||||||||||||||||    
T  50471809 acaacaacaaccaagcgttatcccactaagtggggtcgattacatggatcaaacaac 50471753  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 25575108 - 25575054
Alignment:
Q  95 caacaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaa 148  Q
    |||||||||||||||||| ||||||||||  |||||||| | |||||||||||||    
T  25575108 caacaacaacaaccaagccttatcccactaaatggggtctgctacatggatcaaa 25575054  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 49738550 - 49738604
Alignment:
Q  97 acaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaaca 150  Q
    |||||||||||||||| ||||||||||  |||||||| | |||||||||||||||    
T  49738550 acaacaacaaccaagccttatcccactaaatggggtcggctacatggatcaaaca 49738604  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 33393393 - 33393338
Alignment:
Q  95 caacaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaac 149  Q
    ||||||||||||||||||||||||||| |   ||||||| ||||||||||||||||    
T  33393393 caacaacaacaaccaagctttatcccagtaagtggggtcggttacatggatcaaac 33393338  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 42549835 - 42549863
Alignment:
Q  95 caacaacaacaaccaagctttatcccact 123  Q
    |||||||||||||||||||||||||||||    
T  42549835 caacaacaacaaccaagctttatcccact 42549863  T

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Target: scaffold0570 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 946 - 1000
Alignment:
Q  95 caacaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaa 148  Q
    |||||||||||||||||| ||||||||||  |||||||| | |||||||||||||    
T  946 caacaacaacaaccaagccttatcccactaaatggggtcagctacatggatcaaa 1000  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 32276969 - 32276915
Alignment:
Q  95 caacaacaacaaccaagctttatcccactctatggggtcgt-tacatggatcaaa 148  Q
    |||||||||||||||||||||||||||||   |||| |||| |||||||||||||    
T  32276969 caacaacaacaaccaagctttatcccactaagtgggttcgtctacatggatcaaa 32276915  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 8255529 - 8255557
Alignment:
Q  95 caacaacaacaaccaagctttatcccact 123  Q
    |||||||||||||||||||||||||||||    
T  8255529 caacaacaacaaccaagctttatcccact 8255557  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 16921503 - 16921475
Alignment:
Q  95 caacaacaacaaccaagctttatcccact 123  Q
    |||||||||||||||||||||||||||||    
T  16921503 caacaacaacaaccaagctttatcccact 16921475  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 36447951 - 36447923
Alignment:
Q  95 caacaacaacaaccaagctttatcccact 123  Q
    |||||||||||||||||||||||||||||    
T  36447951 caacaacaacaaccaagctttatcccact 36447923  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 5418358 - 5418304
Alignment:
Q  95 caacaacaacaaccaagctttatcccactctatggggtcg-ttacatggatcaaa 148  Q
    |||||||||||||||||| ||||||||||  |||||||||  |||||||||||||    
T  5418358 caacaacaacaaccaagccttatcccactaaatggggtcgactacatggatcaaa 5418304  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 2090696 - 2090643
Alignment:
Q  96 aacaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaa 148  Q
    |||||||||||| |||| ||||||||||| |||||||| | |||||||||||||    
T  2090696 aacaacaacaacaaagccttatcccactcaatggggtcgggtacatggatcaaa 2090643  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 36806750 - 36806722
Alignment:
Q  95 caacaacaacaaccaagctttatcccact 123  Q
    |||||||||||||||||||||||||||||    
T  36806750 caacaacaacaaccaagctttatcccact 36806722  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 579702 - 579674
Alignment:
Q  95 caacaacaacaaccaagctttatcccact 123  Q
    |||||||||||||||||||||||||||||    
T  579702 caacaacaacaaccaagctttatcccact 579674  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 21519208 - 21519180
Alignment:
Q  95 caacaacaacaaccaagctttatcccact 123  Q
    |||||||||||||||||||||||||||||    
T  21519208 caacaacaacaaccaagctttatcccact 21519180  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 50806949 - 50806893
Alignment:
Q  97 acaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaacaac 152  Q
    |||||||||||||||| |||| |||||  |||||||| |||||||| ||||||||||    
T  50806949 acaacaacaaccaagccttattccactaaatggggtcggttacatgaatcaaacaac 50806893  T

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