View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12121_low_2 (Length: 750)
Name: NF12121_low_2
Description: NF12121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12121_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 19)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 32 - 719
Target Start/End: Original strand, 5159249 - 5159934
Alignment:
| Q |
32 |
catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatttgtcatctaggattctccaagaattt |
131 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159249 |
cattttctctttgacgcgataggttgccaacttcaatgagtaaatgccatctttatcatattcccataccaatttgtcatctaggattctccaagaattt |
5159348 |
T |
|
| Q |
132 |
gagacttcatcttcttgttttgtcatatgcactcnnnnnnn-cttgaaattttttaaatagtcaaacataatttgtaaannnnnnn-ggggaatagttct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5159349 |
gagacttcatcttcttgttttgtcatatgcactcaaaaaaaacttgaaattttttaaatagtcaaacataatttgtaaattttttttggggaatagttct |
5159448 |
T |
|
| Q |
230 |
tacagatttatttattgaaaattatatctctaactatgtactctcnnnnnnnn-ctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaag |
328 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159449 |
tacagatttatttattgaaa-ttatatctctaactatgtactctctttttttttctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaag |
5159547 |
T |
|
| Q |
329 |
ctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggttttggggatggattgtt |
428 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5159548 |
ctataatcaaatgaacggctcaattgaaggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatgg------------attgtt |
5159635 |
T |
|
| Q |
429 |
acaatgaagataacttttttattgattttacattttaaataattaacaaaaacaatgaaataagttgat----gtatatattgacgccattggaaaaact |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
5159636 |
acaatgaagataacttttttattgattttaaattttaaataattaacaaaaacaatgaaataagttaattaatgtatatattgacgccattggaaaaact |
5159735 |
T |
|
| Q |
525 |
ttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaa----ttatgacaggattatgcaatttgaaggatttggaagaactaga |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| || |
|
|
| T |
5159736 |
ttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattaattatgacaggactatgcaatttgaaggatttggtagaactgga |
5159835 |
T |
|
| Q |
621 |
tatcaactataacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaacctcagacttcttgatcttagcgataatttgttcagtggaaa |
719 |
Q |
| |
|
||||| | | ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
5159836 |
tatcagccagaacatgtttagtgctaaatttcctgagtgtttaagcaacttaacaaacctcagagttcttgaacttagtaataatctgttcagtggaaa |
5159934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 217 - 721
Target Start/End: Original strand, 5195065 - 5195578
Alignment:
| Q |
217 |
ggggaatagttcttacagatttatttattgaaaattatatctctaactatgtactctcnnnnnnnn----ctgcagatgttcaacatttgaaaaacttga |
312 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
5195065 |
ggggaatagttcttaccgatttatttattgaaaattatatctctaactatgtactctctttttttttcttctgcagatgttcaacatttgaaaaatttga |
5195164 |
T |
|
| Q |
313 |
aaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggtt |
412 |
Q |
| |
|
||||||||| ||||| | ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5195165 |
aaatgttaagtttaaacgataatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaaataattaattcataattgcttcacgggatggtt |
5195264 |
T |
|
| Q |
413 |
ttggggatggattgttacaatgaagataacttttttattgattttacattttaaataattaacaaaaacaatgaaataag----ttgatgtatatattga |
508 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
5195265 |
ttggggatcgattgttacaatgaagataacttttttttttattttaaattttaaataattaacaaaaacaacgaaataagttaattaatgtatatattga |
5195364 |
T |
|
| Q |
509 |
cgccattggaaaaac-tttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattatgacaggattatgcaatttgaaggatt |
607 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
5195365 |
cgccattggaaaaacttttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattatgacaggactatgcaattttaaggatt |
5195464 |
T |
|
| Q |
608 |
tggaagaactagatatcaactataacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaacctcagacttcttgatcttagcgataattt |
707 |
Q |
| |
|
||| |||||| ||||||| | | ||||||||| ||||||||||||| || ||||||||||||||||||||||||||| ||||||| ||||| ||||| | |
|
|
| T |
5195465 |
tggtagaactggatatcagcaaaaacatgtttagtgctaaacttccagattgtttaagcaacttaacaaacctcagagttcttgaacttagtaataatct |
5195564 |
T |
|
| Q |
708 |
gttcagtggaaatt |
721 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5195565 |
gttcagtggaaatt |
5195578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 256 - 721
Target Start/End: Original strand, 5181710 - 5182184
Alignment:
| Q |
256 |
tctctaactatgtactctcnnnnnnnnctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattca |
355 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |
|
|
| T |
5181710 |
tctctaactatgtactctctttttttcctgcagatgttcaacatttgaaaaacttgaaaatgttaagtttaagaaataatcaaatgaacggctcaattga |
5181809 |
T |
|
| Q |
356 |
aggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggttttggggatggattgttacaatgaagataacttttttattgatt |
455 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5181810 |
aggtatcaatactaccaaacacaaataattaattcataattgcttcacgggatggttttggggatggattgttacaatgaagataacttttatattgatt |
5181909 |
T |
|
| Q |
456 |
ttacattttaaataattaacaaaaacaatgaaataag----ttgatgtatatattgacgccattggaaaaac-tttaagatttttatgataatgtcaatt |
550 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5181910 |
ttaaattttaaataattaacaaaaagaatgaaataagttaattaatgtatatattgacgccattggaaaaacttttaagatttttatgataatgtcaatt |
5182009 |
T |
|
| Q |
551 |
tttgtaaagatgacaggacatag----ttaattatgacaggattatgcaatttgaaggatttggaagaactagatatcaactataacatgtttggtgcta |
646 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| | ||||||| ||||||||||||| |||||| |
|
|
| T |
5182010 |
tttgtatagatgacaggacatagttaattaattatgacaggactatgcaatttgaaggatttggtagaattggatatcagctataacatgtttagtgcta |
5182109 |
T |
|
| Q |
647 |
aacttcctgagtgtttaagcaacttaacaaacctcagacttcttgatcttagcgataatttgttcagtggaaatt |
721 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||| ||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
5182110 |
aacttccagagtgtttaagcaacttaacaaaccttagagttcttgaacttagtaataatctgttcagtggaaatt |
5182184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 471 - 721
Target Start/End: Complemental strand, 4842927 - 4842673
Alignment:
| Q |
471 |
ttaacaaaaacaatgaaataagt----tgatgtatatattgacgccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacag |
566 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |
|
|
| T |
4842927 |
ttaacaaaaacaatgaaataagtaaattaatttatatattgagtccattggaaaaactttaagatttttatgataatgttaattttttgaaagatgaccg |
4842828 |
T |
|
| Q |
567 |
gacatagttaattatgacaggattatgcaatttgaaggatttggaagaactagatatcaactataacatgtttggtgctaaacttcctgagtgtttaagc |
666 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | | ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4842827 |
gacatagttaattatgacaggactatgcaatttgaaggatttggaagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagt |
4842728 |
T |
|
| Q |
667 |
aacttaacaaacctcagacttcttgatcttagcgataatttgttcagtggaaatt |
721 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| ||||| ||||| ||||||||| |
|
|
| T |
4842727 |
aacttaacaaacctcagaattcttgaccttagccataatctgttcggtggaaatt |
4842673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 499 - 721
Target Start/End: Original strand, 5172630 - 5172852
Alignment:
| Q |
499 |
tatatattgacgccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattatgacaggattatgcaatt |
598 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
5172630 |
tatatattgagtccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagataactggacatagttaattatgacaggactatgcaatt |
5172729 |
T |
|
| Q |
599 |
tgaaggatttggaagaactagatatcaactataacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaacctcagacttcttgatcttag |
698 |
Q |
| |
|
|||||||||||| |||||| ||||||| | | ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| |
|
|
| T |
5172730 |
tgaaggatttggtagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaacaaacctcagaattcttgaccttag |
5172829 |
T |
|
| Q |
699 |
cgataatttgttcagtggaaatt |
721 |
Q |
| |
|
| ||||| | ||||||||||||| |
|
|
| T |
5172830 |
ccataatctattcagtggaaatt |
5172852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 5181476 - 5181608
Alignment:
| Q |
31 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatttgtcatctaggattctccaagaatt |
130 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5181476 |
ccatttcctctttgacgcgataggttgccgacttcaatgagtaaatgccatctttatcatattcccataccaatttctcatctaggattctccaagaatt |
5181575 |
T |
|
| Q |
131 |
tgagacttcatcttcttgttttgtcatatgcac |
163 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
5181576 |
tgagatttcatcttcttgttttgtcatatgcac |
5181608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 579 - 721
Target Start/End: Original strand, 5213602 - 5213744
Alignment:
| Q |
579 |
tatgacaggattatgcaatttgaaggatttggaagaactagatatcaactataacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaac |
678 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| ||| |||||||||| ||||||||||||| | || ||||||| |||||||||||||||||||||||| |
|
|
| T |
5213602 |
tatgacaggactatgcaaattgaaggatttggtagagctagatatcagctataacatgtttagcgcgcaacttcccgagtgtttaagcaacttaacaaac |
5213701 |
T |
|
| Q |
679 |
ctcagacttcttgatcttagcgataatttgttcagtggaaatt |
721 |
Q |
| |
|
|| | ||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
5213702 |
ctgaatgttcttgaacttagctataatttgttcagtggaaatt |
5213744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 284 - 389
Target Start/End: Original strand, 5172489 - 5172594
Alignment:
| Q |
284 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataa |
383 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| |
|
|
| T |
5172489 |
tgcagatgttcaacacttgaaaaaattgaaaatgttaagtttaagctataatcaaatgaacggctcaattgaaggtatcaatactatcaaacataaataa |
5172588 |
T |
|
| Q |
384 |
ttaatt |
389 |
Q |
| |
|
|||||| |
|
|
| T |
5172589 |
ttaatt |
5172594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 284 - 389
Target Start/End: Complemental strand, 4843133 - 4843028
Alignment:
| Q |
284 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataa |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||| ||||||| |||||| |||||| |
|
|
| T |
4843133 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaaggttaagcgataatcaaatgaagggctcaattgaaggtatcaatactatcaaacataaataa |
4843034 |
T |
|
| Q |
384 |
ttaatt |
389 |
Q |
| |
|
|||||| |
|
|
| T |
4843033 |
ttaatt |
4843028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 285 - 384
Target Start/End: Original strand, 5212716 - 5212815
Alignment:
| Q |
285 |
gcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataat |
384 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| |||| || | |||||||||||||||||| || ||||||| |||| ||||||||||||||||| |
|
|
| T |
5212716 |
gcagatgttcaacatttgagaaacttgaaaatgctaagtttatgcaacaatcaaatgaacggctcacttgaaggtattaatattaccaaacacaaataat |
5212815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 5194831 - 5194882
Alignment:
| Q |
31 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatc |
82 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5194831 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgccatc |
5194882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 4843339 - 4843278
Alignment:
| Q |
32 |
catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatatt |
93 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
4843339 |
cattttctctttgacgcgatagtttgccgacttcaatgagtaaatgccatctttatcatatt |
4843278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 714 - 750
Target Start/End: Original strand, 5159986 - 5160022
Alignment:
| Q |
714 |
tggaaattacatgcaaggatcattttcattgagcact |
750 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159986 |
tggaaattacatgcaaggatcattttcattgagcact |
5160022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 714 - 750
Target Start/End: Original strand, 5182234 - 5182270
Alignment:
| Q |
714 |
tggaaattacatgcaaggatcattttcattgagcact |
750 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5182234 |
tggaaattacatgcaaggatcattttcattgagcact |
5182270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 714 - 750
Target Start/End: Original strand, 5195628 - 5195664
Alignment:
| Q |
714 |
tggaaattacatgcaaggatcattttcattgagcact |
750 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5195628 |
tggaaattacatgcaaggatcattttcattgagcact |
5195664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 714 - 750
Target Start/End: Original strand, 5213794 - 5213830
Alignment:
| Q |
714 |
tggaaattacatgcaaggatcattttcattgagcact |
750 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5213794 |
tggaaattacatgcaaggatcattttcattgagcact |
5213830 |
T |
|
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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 714 - 750
Target Start/End: Complemental strand, 4857097 - 4857061
Alignment:
| Q |
714 |
tggaaattacatgcaaggatcattttcattgagcact |
750 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4857097 |
tggaaattacatgcaaggatcattttcattgaccact |
4857061 |
T |
|
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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 5172339 - 5172374
Alignment:
| Q |
97 |
ataccaatttgtcatctaggattctccaagaatttg |
132 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5172339 |
ataccaatttgtcatcaaggattctccaagaatttg |
5172374 |
T |
|
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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 4843183 - 4843149
Alignment:
| Q |
239 |
atttattgaaaattatatctctaactatgtactct |
273 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
4843183 |
atttattgaatattatatctctaactatgtactct |
4843149 |
T |
|
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