View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12121_low_3 (Length: 570)
Name: NF12121_low_3
Description: NF12121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12121_low_3 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 215 - 570
Target Start/End: Original strand, 29005689 - 29006045
Alignment:
| Q |
215 |
tatgttgcctgggctggaacttttgtagaaccagcttgttaaagtttttaatttataagaagccacatacatggaccctcctccatctcttgcctgcaaa |
314 |
Q |
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| T |
29005689 |
tatgttggctgggctggaacttttgtggaaccagcttgttaaagattttcatttataagaagccacatacatggaccctcctccatatcttgcctgcaaa |
29005788 |
T |
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| Q |
315 |
atgcctttaatttcaatttgaaaagtttagttctggacttctattttgaatattggcctaccatttctattttaacctaatcttgctacttttgtctctg |
414 |
Q |
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| T |
29005789 |
atgcctttaatttcaatttgaaaagtttagttctggacttctattttgaatattggcctaccatttctattttaacctaatattgctacttttgtctctg |
29005888 |
T |
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| Q |
415 |
ctactaagaaaatcaccatgtgcccatgtcttccatgaagcaccaaattagaaaagatacactcattcctcacttcccatagagccactttcccaatgag |
514 |
Q |
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| T |
29005889 |
ctactaagaaaatcaccatgtgcctatgtcttccatgaagcaccaaattagaaaagatacactcattcctcacttcccatagagccactttcccaatgag |
29005988 |
T |
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| Q |
515 |
gagtaaaatgag-nnnnnnnngattactagcataaccataggcacctccaaataccc |
570 |
Q |
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| T |
29005989 |
gagtaaaatgagaaaaaaaaagattactagcataaccataggcacctccaaataccc |
29006045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 29005487 - 29005635
Alignment:
| Q |
12 |
aacctgtgctgtttctcaattcaatcttgtttgaacaaaagtcacatttattttataagcacttgannnnnnn-attagtctcaattaaaaagttggtca |
110 |
Q |
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| T |
29005487 |
aacctgtgctgtttctcaattcaatcttgtttgaacaaaagtcacatttattttataagcacttgattttttttattagtctcaattaaaaagttggtca |
29005586 |
T |
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| Q |
111 |
gccattaaaaaagcctccccaaaatgcctgaaaatacacttttaaatat |
159 |
Q |
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| T |
29005587 |
gccattaaaaaagcctccccaaaatgcctgaaaatacacttttaaatat |
29005635 |
T |
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